PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006931.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 516aa MW: 55892.5 Da PI: 9.5564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006931.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG006931.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	13.9	0.00016	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ CCG006931.1 156 WKCDKCSKKYAVQSDWKAHVKTC 178 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.21E-7	79	102	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	80	102	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	80	102	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	86	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.2E-5	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.21E-7	151	176	No hit	No description
SMART	SM00355	90	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MSNTTGDGTG SFSSGGGGDE VHLKSLASST VTATNSNGST ITQQLQQPPL KKKRNMPGNP 60 DPSADVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RASGEIRKRV 120 YICPEPSCVH HNPARALGDL TGIKKHFYRK HGEKKWKCDK CSKKYAVQSD WKAHVKTCGT 180 KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGLMP NMEPNIQGQI SSLIPSSMAI 240 NNNPPSQSAM MSNYSHLDTK NSLSLPQALM PPKPSRGSMF SSNTASLFGG SRSMPFNSSS 300 ALQLNANSSA IFEGNGHHNL AGSASMSATA LLQKAAQMGA TASSNNVSSP MMQKSFVTSM 360 APPTFGSMHA QNDQSHVIGG DDGYANQFFN SNGGVGNSVL NDMGMFSAVL DQNNALFKTM 420 EHASSNNENA FQGANSSPRL SSPTSGANPS GLSRFSGDMM TVDFLGIGGS RQRNLHDQHN 480 HQEMEFSRGI SHPRMQGLNH FEQQQAAALE KPLWDV

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MSNTTGDGTG SFSSGGGGDE VHLKSLASST VTATNSNGST ITQQLQQPPL KKKRNMPGNP  60
DPSADVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RASGEIRKRV  120
YICPEPSCVH HNPARALGDL TGIKKHFYRK HGEKKWKCDK CSKKYAVQSD WKAHVKTCGT  180
KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGLMP NMEPNIQGQI SSLIPSSMAI  240
NNNPPSQSAM MSNYSHLDTK NSLSLPQALM PPKPSRGSMF SSNTASLFGG SRSMPFNSSS  300
ALQLNANSSA IFEGNGHHNL AGSASMSATA LLQKAAQMGA TASSNNVSSP MMQKSFVTSM  360
APPTFGSMHA QNDQSHVIGG DDGYANQFFN SNGGVGNSVL NDMGMFSAVL DQNNALFKTM  420
EHASSNNENA FQGANSSPRL SSPTSGANPS GLSRFSGDMM TVDFLGIGGS RQRNLHDQHN  480
HQEMEFSRGI SHPRMQGLNH FEQQQAAALE KPLWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	152	215	3	66	Zinc finger protein JACKDAW
5b3h_F	2e-33	152	215	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146825	0.0	EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036840.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	B9H586	0.0	B9H586_POPTR; C2H2 family protein
STRING	POPTR_0005s02730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]