PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006854.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 454aa MW: 51176.8 Da PI: 6.867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006854.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.8	8.8e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ CCG006854.1 47 LPAGVKFDPTDQELI-EHLEAKVEAKDmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 139 799**********.99*****5554442...143333666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++++ekt+Wvmh+y+l CCG006854.1 140 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 189 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-38	43	208	IPR003441	NAC domain
PROSITE profile	PS51005	33.028	47	208	IPR003441	NAC domain
Pfam	PF02365	2.5E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MSTRCSMASI SSSDLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNYTDRA ASVGEGSSEP NSRRDGGSVS 240 CSSKEISLHG DEISGTGTVA SSLTSYTAMD IQQMKSDHFC FTPFRKGFDE VGIGEASVAR 300 EASASGICDE IREHHQRPHH VAHDPHQQQT QQQQHHYHHH QTAHHQFANT AFHFSTPSHP 360 FSPIISPPPL NHSIMLDEDP YHVSRIILQN EIQQQQQQQH HKLGGRSASG LEELIMGCTS 420 NDVKEDSSIA NPQEAEWLKY SSFWQDPGNQ DHHG

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MSTRCSMASI SSSDLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNYTDRA ASVGEGSSEP NSRRDGGSVS  240
CSSKEISLHG DEISGTGTVA SSLTSYTAMD IQQMKSDHFC FTPFRKGFDE VGIGEASVAR  300
EASASGICDE IREHHQRPHH VAHDPHQQQT QQQQHHYHHH QTAHHQFANT AFHFSTPSHP  360
FSPIISPPPL NHSIMLDEDP YHVSRIILQN EIQQQQQQQH HKLGGRSASG LEELIMGCTS  420
NDVKEDSSIA NPQEAEWLKY SSFWQDPGNQ DHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-13	45	189	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970795	0.0	AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013932.1	0.0	PREDICTED: uncharacterized protein LOC105117855
Swissprot	Q9M0F8	1e-180	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	B9N5H6	0.0	B9N5H6_POPTR; NAC family protein
STRING	POPTR_0018s06790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-169	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]