PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006663.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 281aa    MW: 31431.5 Da    PI: 5.3872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006663.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-06173217655
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR++i ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  CCG006663.1 173 SIAARERRRKITEKTQELGKLIPGgN------KMNTAEMFQSASKYVKFLQ 217
                  67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.023167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-10170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-8170220No hitNo description
SuperFamilySSF474591.96E-10171225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-4173217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MALSICSNLG SSLQHHSLPE LTAYPQGSVE IGNHELFGCN DRLMLSDSFI NPLYEVDDQL  60
FYSDSYTNLL PFSSSPSDNT SPLSPEISPL EDFESYACPK RQKLYTDHFN TKFATSFFEG  120
YVPNPNPGPP EFLPEIPVPE PKFQVPTTFN VGRTLSMMNS KKPSTGVSLS AQSIAARERR  180
RKITEKTQEL GKLIPGGNKM NTAEMFQSAS KYVKFLQAQI GILELTGTTQ ENTEAMHTKE  240
LQTLVTSPTI QEKLYLEQKC LVPRDFVQTI ANDSKRSMQN L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6519060.0JN651906.1 Populus koreana abscisic acid-responsive protein bHLH2 (bHLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039302.10.0PREDICTED: transcription factor bHLH52
TrEMBLA0A1I9W0960.0A0A1I9W096_POPTO; Basic helix-loop-helix DNA-binding superfamily protein
STRINGPOPTR_0001s46530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-33bHLH family protein