PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004627.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 262aa    MW: 30245.3 Da    PI: 4.6494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004627.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G  +W+  +r  g+ R++k+c++rw +yl
      CCG004627.1 14 KGAWSKEEDDKLRVYVQKYGHWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding55.61.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eEd l+++ +++lG++ W+ Ia +++ gRt++++k++w++ 
      CCG004627.1  67 RGNFSEEEDNLIIQMHEELGNK-WSIIAGKLP-GRTDNEIKNHWHTN 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.28961IPR017930Myb domain
SuperFamilySSF466891.52E-3111108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002498.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-231568IPR009057Homeodomain-like
CDDcd001672.31E-91661No hitNo description
PROSITE profilePS5129427.50362116IPR017930Myb domain
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002496.1E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2669116IPR009057Homeodomain-like
CDDcd001675.76E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVKTTLVDKN GLRKGAWSKE EDDKLRVYVQ KYGHWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPDVKRGNF SEEEDNLIIQ MHEELGNKWS IIAGKLPGRT DNEIKNHWHT NLSKRVKQSQ  120
SVSSELVNKE QSSETSQSED GQAEKSETES VSVNTPSEPD RHPKIVENIP SPQEISCSEL  180
SSMNNDYVSG MNGAADSFSP IEIFQDSGFW NQPFLADNND SQDGYHSLLF TEEVYMPSYP  240
FNYDDDSMDW IQQMMQELQE SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047493.10.0PREDICTED: myb-related protein 308-like
TrEMBLB9INU50.0B9INU5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-53myb domain protein 9