PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004419.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 468aa    MW: 51676.4 Da    PI: 6.754
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004419.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10183225547
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+k
  CCG004419.1 183 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQK 225
                  788*************************988888887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-8179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438181225IPR004827Basic-leucine zipper domain
PfamPF001701.8E-7183225IPR004827Basic-leucine zipper domain
CDDcd147081.12E-20183235No hitNo description
SuperFamilySSF579598.13E-7183226No hitNo description
Gene3DG3DSA:1.20.5.1708.5E-8184228No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141441.9E-31265340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGSRTHNNNN NNNNKAVTEM PSYVPQLSTS NPIGTEANNI HPSRVSDFAT FEQSLGFRID  60
DAVDLSRNSM FNQLKSSSQA IGADVQFGTL NKSLASSDIN LSAAIVGSQT LPLQKEVQVN  120
PVSTHSNHPE NWGETNMAEA SPRTDTSTDD TDEKNQRFER GQLAAIAGSD SSDKSKEKAG  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQKARQQG IFISSSGDQT  240
HSMSGNGALA FDAEYARWLE EHNRQISELR AAVNSHAGDA ELRTIVDNVA SHFSDVFRLK  300
GTAAKADVFH ILSGMWKTPA ERCFMWIGGF RSSELLKLLE NQLEPLTEQQ LMGIYNLQQS  360
SQQAEDALSQ GMEALQQSLA ETLANGNPGS SGSSGNVANY MGQMAMAMGK LGTLEGFLRE  420
ADNLRQQTLE QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPQE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951200.0EF195120.1 Populus tremula x Populus alba TGA transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027235.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
RefseqXP_011027236.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLB9H9250.0B9H925_POPTR; BZIP family protein
STRINGPOPTR_0006s03720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-140bZIP family protein