PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 75902.9 Da PI: 6.3849 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 388.1 | 9.9e-119 | 296 | 667 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cAeav++++ + a lL++++++a p+gd+mqRla +f+ +L+arla+s++++ykal +++ts +++l+a+++ ++P+ k+s++ CCG004406.1 296 LRTLLTLCAEAVATDNRRSAIDLLKQIRQNAPPTGDAMQRLANVFADGLEARLAGSGTQIYKALISRPTS---AADVLKAYHMILTACPFRKLSNFFS 390 5789*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I + +e+++rvHi+Df+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfefn+ +a++++++++e+L CCG004406.1 391 NITIKNIAENATRVHIVDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGIDLPNPGfrPAERVEETGRRLENYANTFKVPFEFNA-IAQKWDTIQIEDL 487 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn+ ++l +llde+v +es+rd+vL+l+++++P+v+++ + ++++ F +rf eal ++s+lfd+lea++pre er+ Er ++g+ CCG004406.1 488 KIDRNEVLVVNSLFRLRNLLDETVVVESPRDTVLNLIRKMNPDVFIHGAVNGAYSAPFFITRFREALFHFSTLFDMLEANVPREVPERVLFERDIFGW 585 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer+er et+++W++r+++aGF ++p++ ++ ++ak ++ + + + ++e s++l++gWk+r ++++S+W+ CCG004406.1 586 EAMNVIACEGAERIERPETYKQWQMRIQRAGFMQLPVNREIFTTAKERVQALYHKDFVIDEYSQWLLQGWKGRIVYALSSWK 667 *****************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.481 | 270 | 647 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-116 | 296 | 667 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MSQEVDSYED LDFSDVVLKY ISQMLMEEEM EDKTCMFQES SAALLAAEKS LYELIGEKYP 60 SSPKYPVPRF DQTRESPEKN HDLNCSNYTS STSRSSGSKL VDLGEYKFSR RASQFTPRSS 120 YSSGNSTVTV DGSVDSPVGP NMVAEIFRES ESVMQFKKGF EEASKFIPNG DLFTDLESNG 180 LFLKHPKEDA KDVLAMTEEK NENENYTDGL RRKKSPHLEE LALEGFRSNK QSAVYSESTA 240 SPADFDMVLL NCGRDESSIR AALHNGESKM AQHNGQAKGG KARGKRQGGK RNVVDLRTLL 300 TLCAEAVATD NRRSAIDLLK QIRQNAPPTG DAMQRLANVF ADGLEARLAG SGTQIYKALI 360 SRPTSAADVL KAYHMILTAC PFRKLSNFFS NITIKNIAEN ATRVHIVDFG IMYGFQWPCL 420 IQRLSSRPGG PPKLRITGID LPNPGFRPAE RVEETGRRLE NYANTFKVPF EFNAIAQKWD 480 TIQIEDLKID RNEVLVVNSL FRLRNLLDET VVVESPRDTV LNLIRKMNPD VFIHGAVNGA 540 YSAPFFITRF REALFHFSTL FDMLEANVPR EVPERVLFER DIFGWEAMNV IACEGAERIE 600 RPETYKQWQM RIQRAGFMQL PVNREIFTTA KERVQALYHK DFVIDEYSQW LLQGWKGRIV 660 YALSSWKPDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-50 | 303 | 670 | 26 | 382 | Protein SCARECROW |
5b3h_A | 5e-50 | 303 | 670 | 25 | 381 | Protein SCARECROW |
5b3h_D | 5e-50 | 303 | 670 | 25 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463071.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2K1ZCG1 | 0.0 | A0A2K1ZCG1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s05750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |