PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 670aa    MW: 75902.9 Da    PI: 6.3849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004406.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.19.9e-1192966671374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cAeav++++ + a  lL++++++a p+gd+mqRla +f+ +L+arla+s++++ykal +++ts    +++l+a+++   ++P+ k+s++  
  CCG004406.1 296 LRTLLTLCAEAVATDNRRSAIDLLKQIRQNAPPTGDAMQRLANVFADGLEARLAGSGTQIYKALISRPTS---AADVLKAYHMILTACPFRKLSNFFS 390
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N +I + +e+++rvHi+Df+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rL+++A++++vpfefn+ +a++++++++e+L
  CCG004406.1 391 NITIKNIAENATRVHIVDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGIDLPNPGfrPAERVEETGRRLENYANTFKVPFEFNA-IAQKWDTIQIEDL 487
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+l+Vn+ ++l +llde+v +es+rd+vL+l+++++P+v+++   +  ++++ F +rf eal ++s+lfd+lea++pre  er+  Er ++g+
  CCG004406.1 488 KIDRNEVLVVNSLFRLRNLLDETVVVESPRDTVLNLIRKMNPDVFIHGAVNGAYSAPFFITRFREALFHFSTLFDMLEANVPREVPERVLFERDIFGW 585
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e++nv+acegaer+er et+++W++r+++aGF ++p++ ++ ++ak  ++  + + + ++e s++l++gWk+r ++++S+W+
  CCG004406.1 586 EAMNVIACEGAERIERPETYKQWQMRIQRAGFMQLPVNREIFTTAKERVQALYHKDFVIDEYSQWLLQGWKGRIVYALSSWK 667
                  *****************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.481270647IPR005202Transcription factor GRAS
PfamPF035143.4E-116296667IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSQEVDSYED LDFSDVVLKY ISQMLMEEEM EDKTCMFQES SAALLAAEKS LYELIGEKYP  60
SSPKYPVPRF DQTRESPEKN HDLNCSNYTS STSRSSGSKL VDLGEYKFSR RASQFTPRSS  120
YSSGNSTVTV DGSVDSPVGP NMVAEIFRES ESVMQFKKGF EEASKFIPNG DLFTDLESNG  180
LFLKHPKEDA KDVLAMTEEK NENENYTDGL RRKKSPHLEE LALEGFRSNK QSAVYSESTA  240
SPADFDMVLL NCGRDESSIR AALHNGESKM AQHNGQAKGG KARGKRQGGK RNVVDLRTLL  300
TLCAEAVATD NRRSAIDLLK QIRQNAPPTG DAMQRLANVF ADGLEARLAG SGTQIYKALI  360
SRPTSAADVL KAYHMILTAC PFRKLSNFFS NITIKNIAEN ATRVHIVDFG IMYGFQWPCL  420
IQRLSSRPGG PPKLRITGID LPNPGFRPAE RVEETGRRLE NYANTFKVPF EFNAIAQKWD  480
TIQIEDLKID RNEVLVVNSL FRLRNLLDET VVVESPRDTV LNLIRKMNPD VFIHGAVNGA  540
YSAPFFITRF REALFHFSTL FDMLEANVPR EVPERVLFER DIFGWEAMNV IACEGAERIE  600
RPETYKQWQM RIQRAGFMQL PVNREIFTTA KERVQALYHK DFVIDEYSQW LLQGWKGRIV  660
YALSSWKPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5030367026382Protein SCARECROW
5b3h_A5e-5030367025381Protein SCARECROW
5b3h_D5e-5030367025381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463071.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2K1ZCG10.0A0A2K1ZCG1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein