PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003945.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 625aa    MW: 67641.3 Da    PI: 7.0987
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003945.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30269328159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  CCG003945.1 269 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILTTTYEGTHNHP 328
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31254330IPR003657WRKY domain
SuperFamilySSF1182904.45E-27262330IPR003657WRKY domain
PROSITE profilePS5081127.875264330IPR003657WRKY domain
SMARTSM007744.5E-36269329IPR003657WRKY domain
PfamPF031061.2E-26270328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MDVEDAMRRP RHEVLLKEDD RVDSSGDEGS CREDAAAAKV GSQRGCHEND DRRSSSPQHR  60
DSGKQVVGAT KKERTSMEVD AKESSCQKEQ DDQLESARAE MGEVRKENQR LKIHLDRIVK  120
DYRTLQVQFY DIIQQEETRK STDTVDDHQG TEEHELVSLT LGRISSEPKR DGKNNKTSSQ  180
GKNHDEQVKE SLSLGSLCTF EASKSATNET LPNPSPVNSF GEPKEEAGET WPPSKVLRTM  240
RGGDDEVPQQ NPAKKARVSV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS  300
CPVRKQVQRC AEDMSILTTT YEGTHNHPLP NSATAMASTT SAAASMLLSG SSSSPAGTAG  360
FNNSGTIAID LHGQNYYLSD NSNSKQFYLH NSSLSSQSPY PTITLDLTSN PSSTSSHFNR  420
FTTSYRPTIQ KFASTSLNFG SSDASTAMPW GNGFLTTFGQ SNNRINQLGT LNIGRPAMDQ  480
RNIYDQFYTQ KINDLAAATS QQSLSADTIA AATKAITADP SFQSALADAL TSIIGNGTGS  540
SATGVANLGA VNNLVPKSER GPVSNSFSSS PPKGNPCASY FNKTTSSINS QPAPSSMTMF  600
VPPSLPFSSP TNASASAVDK NDRAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-212693301777Probable WRKY transcription factor 4
2lex_A7e-212693301777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047157.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A2K1XJ020.0A0A2K1XJ02_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-76WRKY DNA-binding protein 72