PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003395.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 146aa    MW: 16139.4 Da    PI: 8.1301
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003395.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260148.51.7e-46131121100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la+++
  CCG003395.1  13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQINSLQTQLAVAQ 110
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  CCG003395.1 111 AE 112
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.13512113IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-4613110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MKESGRKHGA LAPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE  60
LPEHQRRDAV SSMVYEANAR VRDPVYGCVG AISSLQQQIN SLQTQLAVAQ AEVVHMRMRE  120
FTSSSNTGAM DMAVNQDNMG ESLWSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-5291147112LOB family transfactor Ramosa2.1
5ly0_B3e-5291147112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022119.11e-107PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE95e-69LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2I4KKM61e-105A0A2I4KKM6_POPTR; LBD family protein
STRINGPOPTR_0007s08290.14e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-65LOB domain-containing protein 4