PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34390.1 Da PI: 7.9995 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.6 | 8.8e-52 | 11 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+deelv++yL kk+++ + + evd++k+ePwd+p+++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd+++l+ kg+ CCG002794.1 11 LPPGFRFHPRDEELVCDYLMKKASHCDSL---LMIEVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHILR-KGT 104 79********************9998844...4889************7777799**************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg++ktLvfy+grapkg+ktdWvmhe+rle CCG002794.1 105 LVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 135 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.308 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSNISFVEAK LPPGFRFHPR DEELVCDYLM KKASHCDSLL MIEVDLNKCE PWDIPETACV 60 GGKEWYFYSQ RDRKYATGLR TNRATASGYW KATGKDRHIL RKGTLVGMRK TLVFYQGRAP 120 KGKKTDWVMH EFRLEGPLGP PKTSSEKEDW VLCRVFYKNT REVVAKPSIR SCYDDTGSSS 180 LPALMDSYIT FDQNQPNLDD HEQVPCFSIF SQIQTNQNFP YITQMEVPHL PTKGTSPFGQ 240 VPMNITTPSD SFSCDTKVLK AVLNHLNMME SNANIKGSPS LGVSSSESYL SDVRMPNLWN 300 HY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX534240 | 0.0 | JX534240.1 Populus tremula x Populus alba NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012784.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like isoform X2 | ||||
Swissprot | Q84TE6 | 1e-122 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | B9HH13 | 0.0 | B9HH13_POPTR; Uncharacterized protein | ||||
STRING | GLYMA15G40510.1 | 1e-165 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-118 | NAC domain containing protein 1 |