PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 350aa MW: 38955.1 Da PI: 10.2693 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.1e-32 | 284 | 341 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ CCG002206.1 284 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 341 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 6.8E-5 | 128 | 192 | No hit | No description |
Pfam | PF10533 | 2.7E-18 | 235 | 280 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-34 | 270 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.641 | 277 | 343 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-27 | 280 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-39 | 282 | 342 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-27 | 284 | 341 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEGVEEANRA AVESCHRVIS LLSQPQDQVQ YRNIMVETGE AVFRFKKVVS LLNTGLGHAR 60 VRKLKKLPTP LSQSILLDNS LNRTGYTSKT PQFLQSSSYQ ESHPIQEWGS SAKNCLSLGT 120 PSLELSSAGK NPLQLGQPTS AANYQFLQLQ QQQLHRQQLQ QQQQQMKQQA EMMFRKSNSG 180 ISLKFDSSSC TPTMSSTRSF MSSLSMDGSV ANLEGSGFHL MGPARSSDQS SQQHKRKCSG 240 RGEDGSVKCG SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP 300 HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH PRIPAQSANT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 278 | 345 | 10 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029778 | 0.0 | CT029778.1 Poplar cDNA sequences. | |||
GenBank | CT029779 | 0.0 | CT029779.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028741.1 | 0.0 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_011028744.1 | 0.0 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-128 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | B9GS59 | 0.0 | B9GS59_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-116 | WRKY DNA-binding protein 21 |