PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44369.9 Da PI: 4.5278 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.8 | 9.2e-49 | 7 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtd elv++yLk+kv gkkl++ ++i+ev+iyk+ PwdLp k ++++++ +wyfF++++kkya+g r +r+t+ gyWk+tgkd+++ k CCG001572.1 7 LPPGFRFHPTDVELVKYYLKRKVLGKKLHF-QAIAEVEIYKYAPWDLPgKsCLRTGDLKWYFFCPTEKKYASGVRMKRSTDIGYWKTTGKDRSIQY-K 102 79**************************99.89***************6347788899*************************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +e+vg+ ktLvf++grapkg +tdWvm eyrle CCG001572.1 103 NEVVGMIKTLVFHTGRAPKGDRTDWVMYEYRLE 135 999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-56 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.193 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MGKKSSLPPG FRFHPTDVEL VKYYLKRKVL GKKLHFQAIA EVEIYKYAPW DLPGKSCLRT 60 GDLKWYFFCP TEKKYASGVR MKRSTDIGYW KTTGKDRSIQ YKNEVVGMIK TLVFHTGRAP 120 KGDRTDWVMY EYRLEEIELA DKGIAQDGYV LCVIFKKGPG PKNGAQYGEP FKEEEWDDDD 180 DDDEVEEVNF HKAILPAAMH TAFMLPKNAN MSIAMSSYVP ESTCTGLPVS CPSQTPACTT 240 LPMVSSNDVA STEDHQVVHE YVNGGEADSS AGISATAYQQ PSNPKGSILA SSSSYVPEIM 300 CYPAYIPSMD ASQVEAPQIM DNSGDLLSPL AILDNDNTEN VYFGGIAEPE TDIYQNLGDI 360 ASSGSGDYIS NSQYLMDPTR LDSNVGFLEL MDLDTPLYHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 6 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 6 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 6 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 6 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-44 | 6 | 157 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 6 | 157 | 16 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032332.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | Q9FY82 | 1e-85 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | B9MZ91 | 0.0 | B9MZ91_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 6e-84 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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