PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 298aa MW: 32388.9 Da PI: 8.123 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C ++p++ ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e CCG001155.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksSESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVE 101 6*********************9999777899****************************************************************** PP DUF260 94 lallke 99 ++l ++ CCG001155.1 102 AVLKGA 107 998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 9.7E-95 | 1 | 297 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.068 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS SESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQAAV EAVLKGAPIT PINSEAAVNG 120 HGPPLKVYDI RHVSKEENSA ASNDANRART RCRVRRVVKP KASKRACFGN GLASIAVDTL 180 SARDELTRCT SHESSVSHQS ELAVLDGDSK ESDESMVSVE TAEASLLFPP NPESKNDCKA 240 HDVASNGISG LELGLDLTLG FEPVSRAHHV VPVKKRRVEA YGSCDVDTCK MELRLEYP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144234 | 0.0 | EF144234.1 Populus trichocarpa clone PX0011_J05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021242.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-111 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A9P7Z5 | 0.0 | A9P7Z5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-108 | LOB domain-containing protein 41 |