PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 331aa MW: 38164.8 Da PI: 4.8187 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.9 | 2.6e-36 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i+ed+++++++sws+ +nsf+++d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk+ll++i+ CCG000940.1 21 FLTKTYDIVEDASTNHIVSWSRGNNSFIIWDPQAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKHLLKSIR 108 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG000940.1 109 RRKA 112 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.6E-38 | 15 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-60 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.57E-35 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.8E-19 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-31 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.8E-19 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.8E-19 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MASTAIPQPM EGLRDSVPPP FLTKTYDIVE DASTNHIVSW SRGNNSFIIW DPQAFSTSLL 60 PRFFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KHLLKSIRRR KAPQTQTSQQ 120 ALEACVEVGT FGADGEVNRL RRDKQVLMVE LVKLRQQQQT TKACLQLIEQ KLKRTENKQQ 180 QMMSFLARAM QNPYFVQQLA QQKEMRKELE EAISKKRRRP IDQGRSNFEV AEFGHGEGVG 240 TFVKIEHQEF GDLSEFDVPE FHNPAMNMQG LSENQLINLV EERIEEGEEH ENKGNEIDEG 300 FWEDLLNEDI DEEIAVLGSE GEDEEDVLSV G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 7e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 7e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 7e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 7e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 7e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013986 | 0.0 | KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027100.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-135 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0N7DMJ1 | 0.0 | A0A0N7DMJ1_9ROSI; Heat shock transcription factor A6b2 | ||||
STRING | POPTR_0008s15740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-131 | heat shock transcription factor A6B |