PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Whirly | ||||||||
Protein Properties | Length: 265aa MW: 29465.4 Da PI: 9.685 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 207.3 | 1.7e-64 | 88 | 226 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 s+yk+kaal+v+++ p+f+ ldsg+ kl ++G++ll++a+a+++r+ydW +kq+f+ls+te+++lv+l +k+sceffhdp +++s+eGkvrk lkveP CCG000865.1 88 SIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVRKLLKVEP 185 7************************************************************************************************* PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 lpdGsG+f+nlsv+n++++ +e++++Pv+kae++vl s+++ CCG000865.1 186 LPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFN 226 *************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.1E-77 | 77 | 248 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.1E-75 | 81 | 265 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.5E-60 | 89 | 223 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MLQLNSVSRV SSSPQNPKLW LPQYNSLCLP KSISLNSKTS STEKKKTLGV KCQYYDQQHK 60 TFTTPSRPSP SSAPPVGESP PKVFVGHSIY KGKAALTVEP RSPEFSPLDS GAYKLVKEGF 120 VLLQFAPAAS VRQYDWTRKQ VFSLSVTEIG HLVSLDAKGS CEFFHDPNKG KSDEGKVRKL 180 LKVEPLPDGS GHFFNLSVQN KVLNIDENIY IPVTKAEYTV LTSAFNYILP YLLGWHAYAN 240 SIKPDDSSRG NNASPRYGGD YEWSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-112 | 77 | 264 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-112 | 77 | 264 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-112 | 77 | 264 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-112 | 77 | 264 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146407 | 0.0 | EF146407.1 Populus trichocarpa clone WS0117_P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025967.1 | 0.0 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Refseq | XP_011025976.1 | 0.0 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9LL85 | 1e-113 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9PDN0 | 0.0 | A9PDN0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-112 | ssDNA-binding transcriptional regulator |