PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000370.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 385aa    MW: 42154.3 Da    PI: 7.8024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000370.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw +yl
      CCG000370.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAEAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.51e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
      CCG000370.1  67 RGKFNLQEEQSIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24563IPR009057Homeodomain-like
PROSITE profilePS5129425.032965IPR017930Myb domain
SuperFamilySSF466895.5E-3011108IPR009057Homeodomain-like
SMARTSM007172.7E-151363IPR001005SANT/Myb domain
PfamPF002494.5E-171461IPR001005SANT/Myb domain
CDDcd001674.50E-121661No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2564116IPR009057Homeodomain-like
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.82966116IPR017930Myb domain
PfamPF002497.6E-1567112IPR001005SANT/Myb domain
CDDcd001674.69E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVKSQCFEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAEAGLRRCG KSCRLRWTNY  60
LRPDIKRGKF NLQEEQSIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLDKMG  120
IDPVTHKPKA DSFGSGSGHS KGAANLSHMA QWESARLEAE ARLVRESKLS VPNPPKNILS  180
SAVSAQVSNK GSAPPTARPQ CLDVLKAWQG VVFSMFSVRS SGSLSGSLES PTSTLNFSEN  240
ALAIPLVGVQ KNPTTTLAFA TNNATCNRGT TTTEFDGGNQ LECFEKLKEP AQGKRNLESS  300
MAIHDISPYA SDHNAWFVDS SANENAPMGN IIDGFSEILA CNSLDHSPTC SGENINDNYA  360
GNLEDNYWNS LLNLVDASPT GSSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017669.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LE631e-104MY106_ARATH; Transcription factor MYB106
TrEMBLB9HI920.0B9HI92_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-102myb domain protein 106