PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000358.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 448aa    MW: 49676.3 Da    PI: 8.1594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000358.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16138183147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
      CCG000358.1 138 RGHWRPAEDSKLKKLVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 183
                      899*****************************.***********996 PP
2Myb_DNA-binding57.92.3e-18190233146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
      CCG000358.1 190 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 233
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.304133184IPR017930Myb domain
SMARTSM007173.3E-14137186IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-28138231IPR009057Homeodomain-like
PfamPF002491.3E-15138183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-26139191IPR009057Homeodomain-like
CDDcd001673.40E-13141182No hitNo description
PROSITE profilePS5129426.278185239IPR017930Myb domain
SMARTSM007174.7E-15189237IPR001005SANT/Myb domain
PfamPF002493.4E-15190232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-21192238IPR009057Homeodomain-like
CDDcd001675.31E-12192232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MARTLLHVQR QIITAEINGL ACYYSTSPSS STSSPCSSMG IIDRDIGSLC PKSGMTPPTS  60
SFHEMENGRL TWGFPFTGNY HANSDTAVEI RVSDSSDGFG ENNETVNHDA NSSNEENPDG  120
NMMSGKETES GQSKLCTRGH WRPAEDSKLK KLVALYGPQN WNLIAEKLEG RSGKSCRLRW  180
FNQLDPRINR KAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKFR  240
EQSSAYRRRR LSQSVNRRME EIPSFVGRDA GMKTVPPPYC PNISSAGGLN KLSPCQIGNF  300
NGAGRGGVDY GLNGSPHMTS GGESVLSIKV SQSGFCAQQT PFDFFSSPKS NDTMGMFSQT  360
ISWDRPNDET RISGFYPQQH PSYMLTMQQS NHQYPYCFSD STASTLPQAV SAREPSRSSP  420
SVADQSRVSG HFETVPPPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-341382384104C-Myb DNA-Binding Domain
1msf_C3e-341382384104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250YRRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017315.10.0PREDICTED: uncharacterized protein LOC105120703 isoform X1
TrEMBLB9HI820.0B9HI82_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-73myb domain protein 105