PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000354.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 802aa    MW: 89305.1 Da    PI: 6.38
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000354.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.51.2e-171750134
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktile 34
                 kprl+Wt+eLH+rFveav+qLGG++kAtPk++++
  CCG000354.1 17 KPRLKWTQELHQRFVEAVNQLGGADKATPKSLMR 50
                 79*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-141550IPR009057Homeodomain-like
SuperFamilySSF466893.58E-61652IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-111752IPR006447Myb domain, plants
PfamPF143797.6E-11110143IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:3.50.50.601.0E-22453548IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519053.67E-22453616IPR023753FAD/NAD(P)-binding domain
PfamPF007325.3E-7464549IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
Gene3DG3DSA:3.50.50.601.1E-23582601IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF543735.98E-22598732No hitNo description
PfamPF051991.6E-27648775IPR007867Glucose-methanol-choline oxidoreductase, C-terminal
Gene3DG3DSA:3.50.50.601.1E-23658672IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.601.1E-23727790IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519053.67E-22731785IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MGLQHQSMNL VLSTDAKPRL KWTQELHQRF VEAVNQLGGA DKATPKSLMR KYRLGKSQQS  60
LISIESKQED DKEIQSSDDH FKESAVTRSS RGICSDGNHH PINESFQIAQ ALQMQMEVQR  120
HLQLRIEAQG KYLQTVLKKA QETLAGYNSS SMGIELAKAE LCRLASMVNS GCPSSSISEL  180
TETGGSILKE IERTQMRNTV CSMESSLTSS ESSGRKEDMQ IENEIHDTNK SNTASVELPL  240
MDIHPQENLL DNGSSNQGKK RRGSIISDGV SVEQPLARRL KNGDQLRKTI HTTLGVWYPL  300
AGFEPKMTTE GQLPTLAKYL HLAVHLMKYQ MRCVQHILGK DPIVEFNYLE NEVDLEEERA  360
ETAQLLEKIA MSMSITRFTS TRPQHNSSSP SELRNHCKQN VGSTFWKSPG TLLMLERYQG  420
IKILEEREIA SPIATQPCPE QILSFSKTLP YMTPDVTQIS GRSFDYIIVG GGTAGCPLAA  480
TLSERYSVLL VERGSSPYEN PFVLDKRFFG FPLFQTNGFS SISQSFISKD GVSNSRGRVL  540
GGSSAINGTE NETTVHGIRF IKSDGNVSQT YEAYLKQLEN SDFPEIGQEM IDNPSISVLL  600
ESDAEVQLPD PPQIVGIADD FKFIVQGFIL PISINATSIP IGIKLAFPAS TGKLELNTTD  660
PRQNPLVEFN YLAEEKDLKE CIKMVQLVER VARSKSIAGF LGKEHYSNSK SPHELREFCK  720
KNVRTFYHYH GGCAVGSVVD NDYRVHGVTE LRVVDGLTFL ESPGTNPMAT LLMLGRYQGI  780
EILAENNLHE PSTSNHNHIH IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ju2_A3e-2646378526516hydroxynitrile lyase
1ju2_B3e-2646378526516hydroxynitrile lyase
3gdn_A2e-2646378526516R-oxynitrile lyase isoenzyme 1
3gdn_B2e-2646378526516R-oxynitrile lyase isoenzyme 1
3gdp_A2e-2646378526516R-oxynitrile lyase isoenzyme 1
3gdp_B2e-2646378526516R-oxynitrile lyase isoenzyme 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2306111e-170CU230611.1 Populus EST from mild drought-stressed leaves.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.17e-61G2-like family protein