PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000159.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 608aa    MW: 65973.9 Da    PI: 6.3277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000159.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-175398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
      CCG000159.2 53 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 98
                     79******************************.***********985 PP
2Myb_DNA-binding60.92.7e-19105149147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ 
      CCG000159.2 105 RKPFTEEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 149
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.88748103IPR017930Myb domain
SuperFamilySSF466891.23E-3150146IPR009057Homeodomain-like
SMARTSM007173.2E-1552101IPR001005SANT/Myb domain
PfamPF002491.3E-165398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2654106IPR009057Homeodomain-like
CDDcd001673.42E-145597No hitNo description
SMARTSM007173.4E-18104152IPR001005SANT/Myb domain
PROSITE profilePS5129422.418104154IPR017930Myb domain
PfamPF002495.1E-17105149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-24107153IPR009057Homeodomain-like
CDDcd001673.77E-14107150No hitNo description
PROSITE profilePS5129218.902477543IPR011016Zinc finger, RING-CH-type
Gene3DG3DSA:3.30.40.107.5E-16482538IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.12E-10482539No hitNo description
SMARTSM007444.3E-19484537IPR011016Zinc finger, RING-CH-type
PfamPF129069.0E-10485536IPR011016Zinc finger, RING-CH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MQNQTENNNE SMRITEGDRE NQTNSPTGGD GGADSGELGG GIGGNGRTNG KVKGPWSPEE  60
DAVLSQLVSK FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCLTRKPFTE EEDRIIIAAH  120
AKHGNKWAAI ARLLPGRTDN SIKNHWNSTL RRRWADLIRL KPGTSDVMED GSIEITRASS  180
EETLSVCDIS SSQPPEGRDV TIDDQPSQHE DKAQTDTVPQ TNEVTVATEP HGNLTLPRPE  240
ARVSAFKVYN PPSGLKMSSG LTRTVPAHGP SVQTPKPDLG SCKFLEDVHC EPIIPSRCGY  300
GCCATPSGGH PSSSLLGPEF VEYEEPPPFS SQELISIATD LNNIAWMKSG LENSSTGISN  360
TASYRMSQGT PVDSQMGMSE QNLRNGHMHF EEGRSRLMGT MAGPWPLELQ AIKLCTLPRP  420
KAHVGAFKLR HPNNKQSVGE EHIGSSSESG SRSEIVKERS SVSVVDLECG APEIKLHLAK  480
VERDCRICHL TMDAGNLESG VPFELGCSCK DDLAAAHKQC AEAWFKIKGN KTCEICGSVA  540
RNVAGANETE LAEQGNQANN GALATTTAPV QPAETRNFWQ GHQFLNFLLA CMVFAFVISW  600
LFHFNVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-38521533104C-Myb DNA-Binding Domain
1msf_C6e-38521533104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784400.0GU278440.1 Populus balsamifera isolate FBK13 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784410.0GU278441.1 Populus balsamifera isolate FBK13 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784420.0GU278442.1 Populus balsamifera isolate INU03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784430.0GU278443.1 Populus balsamifera isolate INU03 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784450.0GU278445.1 Populus balsamifera isolate HAY07 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784470.0GU278447.1 Populus balsamifera isolate KUU07 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784490.0GU278449.1 Populus balsamifera isolate NWL07 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784510.0GU278451.1 Populus balsamifera isolate POR11 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784530.0GU278453.1 Populus balsamifera isolate LOV02 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784550.0GU278455.1 Populus balsamifera isolate RNA13 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038690.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A2K1ZCQ70.0A0A2K1ZCQ7_POPTR; Uncharacterized protein
STRINGcassava4.1_008330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-89myb domain protein 109