PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000127.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 307aa    MW: 34293.1 Da    PI: 7.1532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000127.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000185577123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  CCG000127.1 55 YSCSFCKREFRSAQALGGHMNVH 77
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-65281No hitNo description
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
SMARTSM003550.0065577IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-65578IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLKSQL EAATDSNLKC SLEEKAFAED SSGHLGGCIW PPRSYSCSFC  60
KREFRSAQAL GGHMNVHRRD RARLKQSLTP NPHNDVFRHQ NQIQRSLKSP GSHFPTEVCS  120
LDNYDHDPKL SVSGTINIAS TLSSSRFSAM SPHENLSDHA FVSPFSSYFE QEQHKGYPHL  180
DNNLSGSDHS LTVRLLNDSE SKPEAEKNQG KLDSTCWRHD NFVATDLFMG LSSATNSQSL  240
SSPDSCGNEA ISCKGPKTNV SVLSLLMKPR SNDGYTQSEA IGPNSSSMED IDLELRLGEP  300
PNVKKWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135077229superman protein
2l1o_A3e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4445467e-41AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033484.10.0PREDICTED: zinc finger protein 1-like isoform X1
TrEMBLB9HML00.0B9HML0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-25C2H2 family protein