PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g10610
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 372aa    MW: 42613.8 Da    PI: 4.7397
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g10610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix477e-15136220286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+++e+  L++a   +  r +r++l+   W+ev++++ r  ++er+ +qC+++++ l+k+ykk+k    +    ++s+++yf++++
  CA12g10610 136 WSERETFILLDAWGTRFVRHGRKSLRSEEWQEVAERVsRGSKIERTDTQCRNRLDTLKKKYKKEKMKIAET-GSTTSKWVYFKKMD 220
                 *************************************566788**********************999985.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.249134193IPR017877Myb-like domain
PfamPF138377.4E-21135222No hitNo description
Gene3DG3DSA:1.10.10.601.0E-4136204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDDIEGYGRY PPSTYGMNQG YELSNRQKLP VHETSYSRHV DNQYVEEGGD DEDADEEEED  60
DDDGGDENGV QRIGKDVFED DDDDDDYGDS QRHQKKRKLK SLLSSYEFAP REPPPSTTAA  120
TAPKHSSGGR NPLSDWSERE TFILLDAWGT RFVRHGRKSL RSEEWQEVAE RVSRGSKIER  180
TDTQCRNRLD TLKKKYKKEK MKIAETGSTT SKWVYFKKMD MLLTSTPQKA GVSCGMDSGE  240
YVFMSQKVYL NHANGLDEMR VSPANSESAD CEEEDSEDLP PKRSRNVQSG GNGHSFKLIV  300
DSIYKFCEIY VKIENSKRQQ MLELEKMRMN FHRELEMQKR QIVERAQAEI ARIRQGSDEE  360
NDMSAENVSG D*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346580.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A2G2Y8N80.0A0A2G2Y8N8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000805930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-65Trihelix family protein