PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g19180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 491aa    MW: 54390.9 Da    PI: 9.457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g19180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147696323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++C+k F r  nL+ H r H
  CA11g19180 76 CEICNKGFQRDQNLQLHRRGH 96
                *******************88 PP
2zf-C2H211.90.0007151173123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  CA11g19180 151 WKCEKCSKKYAVQSDWKAHNKIC 173
                 58*****************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.67E-77396No hitNo description
SMARTSM003550.117496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035579116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.67E-7146171No hitNo description
SMARTSM00355160151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMFNDELSCS IRGGFTFIQD PKNPSSNISH NPNPNPNPTA SSTNKRKRNL PGNPDPDAEV  60
IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEL IKKKVYICPE  120
SSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHN KICGTREYKC  180
DCGTLFSRKD SFITHRAFCD ALAEESARFT SVPTSTNLNN LRNQLLNGGI NTNLQQQMSG  240
NISQFGSLFR PELMGSLDPS SHHHQLNLDG QKSRLPLWLH HDNANSGNPN DFLSTQSSTP  300
TTTLPHELVQ MAPHTNMLDM SSTQNGNNNN NNQWFINTNG ATATSSSSMP RVLKEEEDIN  360
NKSISPMYCN NSHMSATALL QKAAQIGSTR SNNNSSLFST QFGLMASSSL SNLNSLANID  420
NIEGSVAANA TSLVDNNANT LMMMPNNKGK QVNIEASLTR DFLGVGGNEK RPFLQQSHEL  480
AKFGNNTGIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-37147212368Zinc finger protein JACKDAW
5b3h_F4e-37147212368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2124371e-154AC212437.2 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence.
GenBankAC2316701e-154AC231670.1 Solanum tuberosum chromosome 11 clone RH121D01, complete sequence.
GenBankHG9754501e-154HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755231e-154HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547881.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ9ZWA61e-112IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2G2YHT00.0A0A2G2YHT0_CAPAN; Zinc finger protein JACKDAW
STRINGPGSC0003DMT4000209450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]