PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 677aa    MW: 75043 Da    PI: 8.2843
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24113214199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++el
  CA11g18930 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGEL 207
                 89****************************997556555..8************************************************..4499999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  CA11g18930 208 CLGIRRA 214
                 ****996 PP
2Auxin_resp116.72e-38271354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+++++FevvY+Pra t+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+rWpnS+Wr+L+
  CA11g18930 271 AAYLAASGQPFEVVYYPRANTPEFCVKASSVNAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIRWPNSPWRLLQ 354
                 577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-37105218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-29109217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-21112213No hitNo description
PROSITE profilePS5086313.197113215IPR003340B3 DNA binding domain
PfamPF023626.4E-22113214IPR003340B3 DNA binding domain
SMARTSM010191.0E-22113215IPR003340B3 DNA binding domain
PfamPF065071.1E-33271354IPR010525Auxin response factor
PROSITE profilePS5174514.832577655IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MKEVLEKCVD SQLWHACAGG MVQVPAVNSK VYYFPQGHAE HALTNVDFSG IPRSPALILC  60
RVAAVRFLAD PETDEVYARI RVVPVGNKGD DYDDDDDILG SNESGTAEKP NSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAENGELCLG IRRAKRGGSG GPETPSGWNS ASGNYGGFSA  240
FLREDMNKNG NLSAGSFRGK GRVRPESVVE AAYLAASGQP FEVVYYPRAN TPEFCVKASS  300
VNAAMRIQWC SGMRFKMAFE TEDSSRISWF MGTISSIQVA DPIRWPNSPW RLLQVSWDEP  360
DLLQNVKHVS PWLVELVSNM PVIHLSPFSP PRKKLRLPPD FSLDNQFTLP SFSGNPLRSS  420
SPFCCPSDNI TAGIQGARHA QFGVPLLDLH LSNKVQSGQL APSFQRVVAD SQRSNVINKY  480
QNDRNDNISC LLTIGTSSKI SEKKDSVITP RFLLFGQPIL TEQQISSRCS VNAPEVQSRK  540
DLGRIQLKSE RFPPEQISSA AFFWNRGYHA AELGVNTGHC KVFLESEDVG HTLDLSVLGS  600
YEELYRRLAY IFGLERLDML TRVLYHDATG AVKHTGDEPF SDFVKSAKRL TVLMNSSSSI  660
KRYSLIIILF FSSLYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-83937551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9117880.0JF911788.1 Solanum lycopersicum cultivar MP1 auxin response factor 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548262.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2YI670.0A0A2G2YI67_CAPAN; Auxin response factor
STRINGSolyc11g069500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]