PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g15270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 362aa    MW: 39155.1 Da    PI: 5.9233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g15270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-1587131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G+g+W++I+r + + Rt+ q+ s+ qk+
       CA11g15270  87 PWTAEEHRLFLQGLAKYGKGDWRAISRNFVLSRTPTQVASHAQKF 131
                      7******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.569761IPR017884SANT domain
SMARTSM007173.6E-5859IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-51163IPR009057Homeodomain-like
CDDcd001671.41E-51157No hitNo description
SuperFamilySSF466892.19E-91164IPR009057Homeodomain-like
PROSITE profilePS5129417.5780136IPR017930Myb domain
SuperFamilySSF466899.33E-1681136IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-1584134IPR006447Myb domain, plants
SMARTSM007178.2E-1284134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-1285127IPR009057Homeodomain-like
PfamPF002491.8E-1187130IPR001005SANT/Myb domain
CDDcd001676.73E-1187131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSLDRTCKRS SWTKEENKAF ENALADYSGD RDLIQQIAAA VPGKSLEEVI EHYLVLVEDI  60
KDIESGIVPL PKYRRMQSST ERRKGIPWTA EEHRLFLQGL AKYGKGDWRA ISRNFVLSRT  120
PTQVASHAQK FYTRLNDKNN LKKRRSIHDV TSAADITEPS QGPCGGQLQW PITNYVTDAF  180
NTGMLSIPEP VTTRISTDAI EGASAADLEK IPIGAAVGNE LNSSFPGMVE FVQSIEGHII  240
VPAEGTSGVC HGVDTKTSPS HSLQPSIAGG SGMYIPSFNN VRYDLTALMS KQLFGSSQVG  300
PTVNSASLPL PIVDRIGVQD CIASPSIPGS SSGGTYPCWN PSNIDDNTFD LVNLFPDGLG  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1412741174RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547714.10.0PREDICTED: uncharacterized protein LOC107847759
RefseqXP_016547716.10.0PREDICTED: uncharacterized protein LOC107847759
RefseqXP_016547717.10.0PREDICTED: uncharacterized protein LOC107847759
TrEMBLA0A2G2YGT90.0A0A2G2YGT9_CAPAN; Transcription factor RADIALIS
STRINGXP_009631817.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-56MYB family protein