PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g13620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 19043 Da PI: 9.916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+Fs+ L H +H CA11g13620 50 FKCKTCNKRFSSFQALGGHRASH 72 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00073 | 92 | 112 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 +kC++Cg+ Fs+ L H+r CA11g13620 92 HKCSICGMEFSSGQALGGHMR 112 79*************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.44E-8 | 49 | 114 | No hit | No description |
SMART | SM00355 | 0.05 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.3E-11 | 50 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0074 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.1E-12 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 92 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MNKNILNNMS VMKRKREDYG LVEAEAMANC ALMLSSRSSA SFDGDNLNSF KCKTCNKRFS 60 SFQALGGHRA SHNKRPKLLG DFLIQAKKNM LHKCSICGME FSSGQALGGH MRCHREEINK 120 TVIPVLKKSN SSKRIFGLDL NLTPHDDDDD VDLKLWPTAP ISSPVLRIFI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006599 | 1e-37 | AB006599.1 Petunia x hybrida mRNA for ZPT2-12, complete cds. | |||
GenBank | AB006600 | 1e-37 | AB006600.1 Petunia x hybrida mRNA for ZPT2-13, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546743.1 | 1e-124 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 1e-33 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A1U8EHR4 | 1e-122 | A0A1U8EHR4_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YGS3 | 1e-122 | A0A2G2YGS3_CAPAN; zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2G3AV18 | 1e-122 | A0A2G3AV18_CAPCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040143 | 2e-78 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400040144 | 2e-78 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-29 | C2H2 family protein |