PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g10960

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 324aa MW: 35805.2 Da PI: 9.8516

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g10960	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	1.9e-10	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ ++ ++G+g W+tI + R+ ++k++w++ CA11g10960 5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlFLRSNVDLKDKWRNM 56 79********************************955*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.941	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.13E-15	2	72	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-13	4	57	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	1.02E-17	6	57	No hit	No description
PROSITE profile	PS51504	24.35	114	188	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	3.4E-13	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.85E-16	118	195	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.2E-15	118	193	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	3.1E-8	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0033613	Molecular Function	activating transcription factor binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0070491	Molecular Function	repressing transcription factor binding
GO:1990841	Molecular Function	promoter-specific chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LFLRSNVDLK DKWRNMTVMA 60 NGWSSREQTK LAVKKMKQAP KQDGSPMTDT TAAESDEEAA EARPATTSSG SPQIHGSKKS 120 MIRLDNLIME AISSLKEPGG SNKTTIAEYI EAQYWAPPNF KRLLSGKLKY LTATGKLIKM 180 KRRYRIVPTS TPSDSRRNLS ITLLDNKQRI FSKIDRDDLN MLTSQIDLEL AKMKHMKPQE 240 AAAAAAQAVA EAEAAIVEAE EADREADAAE ADAEAAQAFS VAANKTLHGR SAPRMVRHPF 300 LPIIWSLCII LFVAPIYLSF YCW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00607	ChIP-seq	Transfer from AT1G49950	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-143	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	1e-143	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553241.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X1
Refseq	XP_016553242.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X2
Swissprot	Q8VWK4	6e-96	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2G2VMW4	0.0	A0A2G2VMW4_CAPBA; Telomere repeat-binding factor 1 (Fragment)
TrEMBL	A0A2G2YFA0	0.0	A0A2G2YFA0_CAPAN; Telomere repeat-binding factor 1 (Fragment)
TrEMBL	A0A2G3B965	0.0	A0A2G3B965_CAPCH; Telomere repeat-binding factor 1 (Fragment)
STRING	PGSC0003DMT400059543	1e-168	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2864	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-90	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]