PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g10800

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 235aa MW: 26404.5 Da PI: 9.1039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g10800	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	177	213	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++f L l+P + ++K++Ka++L A++Y+k+Lq CA11g10800 177 KLSQRFIALSALIPGL----KRKMDKASVLGDAIKYLKQLQ 213 78899********9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.661	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-8	172	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-12	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-7	176	217	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-12	176	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	177	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAYWFSFDEL SAISIASSFS ENTLHDSFIY RDHPIVGHKR PMELSQTVEE RPLKNPKTSH 60 SWNNNSSYHE NDQMSSSQSV AYPNYSHLIN SNNFTNQQVV TMKPKEETTL SCSSITFAAD 120 HHNNLVCHQD SFANQNYMFK KANNSCQGAN KSVSTNNGKL TQAQDDITVR GKDAKKKLSQ 180 RFIALSALIP GLKRKMDKAS VLGDAIKYLK QLQQSVKTLE EQTPKKSVES QCFS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582322.1	1e-131	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A2G2YFQ3	1e-175	A0A2G2YFQ3_CAPAN; Transcription factor bHLH18
STRING	PGSC0003DMT400013074	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-18	bHLH family protein