PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g10410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 252aa    MW: 28536.9 Da    PI: 6.9627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g10410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-0586105120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  CA11g10410  86 FSCPLCFKTFNRYNNMQMHM 105
                 89*****************9 PP
2zf-C2H215.16.5e-05170192123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  CA11g10410 170 FMCRKCGKAFAVRGDWRTHEKNC 192
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.65E-581108No hitNo description
Gene3DG3DSA:3.30.160.601.9E-586105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6686113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576679.18E-7152190No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6166190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549170190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
ENKEESFISN FGDEDQDDES VSVALQLGLP NPSPQDVISS ISNTNKEQEE LTVANIGYSS  60
TTSSTLHKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR  120
GTQPTAMLRL PCFCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA  180
VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE EEDEPASEIE  240
QDHDHDHDPS N*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548865.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U8EZP80.0A0A1U8EZP8_CAPAN; zinc finger protein WIP2
STRINGXP_009780788.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]