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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CA11g04380 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
MYB |
| Protein Properties |
Length: 343aa MW: 39131.3 Da PI: 8.8695 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA11g04380 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.7 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed++l+ ++++G g+W++ +++ g+ R++k+c++rw +yl
CA11g04380 14 KGPWTHDEDQKLLSFIEKHGCGSWRSLPAKAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 47 | 5.9e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ +E+ +++++++lG++ W++Ia +++ +Rt++++k++w++
CA11g04380 67 RGKFSLQEERTIIHLHALLGNR-WSAIATYLP-RRTDNEIKNYWNS 110
89********************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MGRSKCCDKE GLKKGPWTHD EDQKLLSFIE KHGCGSWRSL PAKAGLQRCG KSCRLRWTNY 60
LRPDIKRGKF SLQEERTIIH LHALLGNRWS AIATYLPRRT DNEIKNYWNS RLKKRLTKMG 120
IDPMTHKPKI TNKLNGVASS KYVANLSHMA EWESARLEAE ARLVQKSKDS KILFNNNNIN 180
HSTISQQLPY YQPPCLDILK AWQMSSTKLP TINDISAILL NNSRNNNLES SIPSTLNSSE 240
NLFVNNNVPT TTANVRDDHQ IPPNLSTFES CFEDDQLQTD LPSFMQEFSG LFPEYYTQNS 300
TNIQVDNFMG SCSGDIEDNK LINWNNFPHY LVNSPIGSPL FF*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC150162 | 1e-147 | AC150162.1 Solanum demissum chromosome 5 clone PGEC160O2, complete sequence. |
