PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g00840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 790aa    MW: 90261.9 Da    PI: 6.5741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g00840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.00023136165331
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C. CS
         HLH   3 rahnerErrRRdriNsafeeLrellPk.as 31 
                 +++n+ E+r+R ++ + f   r+ lP+ ++
  CA11g00840 136 KKANILEQRYRTNVGELFGHVRKKLPWaDP 165
                 578************************443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.7E-548165IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045572.2E-13168260IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008071.35E-138267575No hitNo description
Gene3DG3DSA:3.40.50.6202.8E-38267336IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523742.79E-83267577No hitNo description
PfamPF007491.5E-116267570IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
TIGRFAMsTIGR004403.5E-188268786IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.6E-7271283IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780274285IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.6E-7300313IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.107.2E-40340442No hitNo description
PRINTSPR009874.6E-7443453IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6202.8E-38445494IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.102.8E-31495572IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507151.52E-56573783IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039503.2E-42573764IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.103.9E-30581691IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.102.6E-29692782IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDEK TAKNTLANNK VTTNLTAVIH EAAVTDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPAQLE AAFAYLSATA SENLKVHDFE EACGVAGVEV  120
SKDEIERAVS EVFEEKKANI LEQRYRTNVG ELFGHVRKKL PWADPKVVKE VVDLELYKLL  180
GERTAADNEK PVKKKKEKPV KTEDKAKVEE TSAPKQSEEE LNPYLIFPSP EENYKVHTEV  240
YFSDQSVLRA CNSKELLEKH LKVTGGKVQT RFPPEPNGFL HIGHAKAMFV DFGLAKDRGG  300
GCYLRFDDTN PEAEKKEYID HIKEIVGWMG WEPFKITYTS DYFQDLYELA VELIRRGHAY  360
VDHQTPDEVK EYREKKMNSP WRDRPIEESL RLFDEMKRGM IDEGKATLRM KQDMQNDNFN  420
MYDLIAYRFT PHPHAGDKWC IYPSYDYAHC IVDSLENITH SLCTLEFETR RASYYWLLDA  480
LSLYQPFVWE YSRLNVSNTV MSKRKLNRLV TEKWVDGWDD PRLMTLAGLR RRGVTSTAIN  540
AFVRGIGITR SDSSMIQLSR LEYHIREELN KTAARTLVVL NPLKVVITNL EAGLVMDLDA  600
KKWPEAPADD ASSFYKVPFS RVVYIERSDF RLKDSKDYYG LAPGKSVLLR YAYPIKCTDV  660
ILADDKETVL EIRAEYDPSK TIKPKGVLHW VAEPSPGVDP LKVEIRLFDR LFRSENPAEL  720
DDWLGDLNPE SKVVIQNAYA VPSVSKAALG DRFQFERLGY FAVDKDSTSE KLVFNRTVTL  780
RDNYAKGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.0978631798Glutamine--tRNA ligase
4ye6_A0.097868775Glutamine--tRNA ligase
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-87HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-87HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547952.10.0PREDICTED: glutamine--tRNA ligase isoform X2
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A2G2YC560.0A0A2G2YC56_CAPAN; Glutamine--tRNA ligase
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213