PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA10g05400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 735aa MW: 80877.6 Da PI: 5.7962 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+ qVk+WFqN+R+++k CA10g05400 58 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP | |||||||
2 | START | 212.1 | 2e-66 | 252 | 474 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ela +a++el+++a+ +ep+W +ss +n++e+ ++f+++ + +++ea+r+s+vv+ + ++lve+l+d++ qW++ ++ ka++lev CA10g05400 252 ELAVAAMEELIRLAQTGEPLWIQSSennpneVLLNEEEYARTFPRGIGpkslgFKSEASRESAVVIVNYVNLVEILMDVN-QWTNFFTgivsKATILEV 349 57899********************77777666788888888888888********************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 +s+g galq+m+ae+q+++plvp R+ +fvRy++q+ +g w++vdvSvd+ ++ + v R++++pSg++i++++ng+skvtw+ehv++++r CA10g05400 350 LSTGvagnynGALQVMTAEFQVPTPLVPtRENYFVRYCKQHADGAWAVVDVSVDNLRSTS----VSRCRRRPSGCVIQELPNGYSKVTWIEHVEVDDRA 444 *********************************************************975....8********************************** PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+++r+lv sgla+gak+wvatl+r ce+ CA10g05400 445 VHSIYRPLVDSGLAFGAKRWVATLERICER 474 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-19 | 42 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 46 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-18 | 57 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.55E-18 | 58 | 116 | No hit | No description |
Pfam | PF00046 | 8.2E-18 | 58 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 1.37E-40 | 243 | 476 | No hit | No description |
PROSITE profile | PS50848 | 48.641 | 243 | 477 | IPR002913 | START domain |
CDD | cd08875 | 3.74E-127 | 247 | 473 | No hit | No description |
SMART | SM00234 | 2.4E-64 | 252 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-56 | 253 | 474 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.8E-7 | 313 | 474 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-25 | 495 | 726 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 735 aa Download sequence Send to blast |
MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFESKSGTD IMEAPSGDDQ DPNKRPKKKQ 60 YHRHTQHQIQ ELESFFKECP HPDDKQRKDL GKRLGLEPLQ VKFWFQNKRT QMKSQHERHE 120 NTQLRNENEK LRAENIRYKE ALTTATCPNC GGPATIGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PMLNYPQLPS LGPPTRSPLD LGITAANLGH QLGEMFTTST SAGDLLRSIS 240 GPTEADKPII IELAVAAMEE LIRLAQTGEP LWIQSSENNP NEVLLNEEEY ARTFPRGIGP 300 KSLGFKSEAS RESAVVIVNY VNLVEILMDV NQWTNFFTGI VSKATILEVL STGVAGNYNG 360 ALQVMTAEFQ VPTPLVPTRE NYFVRYCKQH ADGAWAVVDV SVDNLRSTSV SRCRRRPSGC 420 VIQELPNGYS KVTWIEHVEV DDRAVHSIYR PLVDSGLAFG AKRWVATLER ICERLASVMA 480 SNIPTGDGKL IITSPEGRKS MLKLAERMVM SFCAGVGAST AHTWTTLSGS GADDVRVMTR 540 KSIDDPGRPP GIVLSAATSF WLPVPTKRIF DFLRDENSRN EWDILSNGGL VQEMAHIANG 600 RDSGNSVSLL RVNSGNSTQN NMLILQESCL DSTGCYVIYA PVDIAAMNVV LSGGDPDYVA 660 LLPSGFAILP DGSSNASSAE NTNVAGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIKC 720 TVERIKAAIQ GENA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545426.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_016545427.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A1U8EDY4 | 0.0 | A0A1U8EDY4_CAPAN; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2G2YJM0 | 0.0 | A0A2G2YJM0_CAPAN; homeobox-leucine zipper protein MERISTEM L1 | ||||
STRING | Solyc10g005330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|