PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g07360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 746aa MW: 82681 Da PI: 5.5113 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 50 | 106 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r++ +++t++q++eLe++F+ +++p+ ++r+eL++ lgL+ q+k+WFqN+R+++k+ CA09g07360 50 RKRYHRHTQHQIQELEAYFKDCPHPDDKQRKELSRVLGLDPLQIKFWFQNKRTQMKN 106 789999************************************************995 PP | |||||||
2 | START | 188.6 | 3.1e-59 | 262 | 482 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 la+ a++e+v++a +ep+W++s + +n++e+ + f+++ + +++ea+r++++v+m++ +lve+l++ + W+ +a +a+t++v+s CA09g07360 262 LALVAMEEFVQMAHMKEPLWFSSNidngtSLLNEEEYFRFFPRGIGprpigFNTEASRDTAIVIMNPINLVEILMEAN-HWSSLFAnivsRASTIDVLS 359 67889*********************99999************999********************************.88888888888********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 ++ ga q+++ae+q++sp vp R+ +fvRy++ +g+w+++dvS+d+ + R++++pSg+li++++ng skvtwvehv++++ l+h CA09g07360 360 TAvggnynGAMQVIFAEFQVPSPQVPtRECYFVRYCKHRADGTWAVMDVSLDQIRAGA----ALRCRRRPSGCLIQELPNGCSKVTWVEHVEVDDTLVH 454 ********************************************************98....5************************************ PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +++++lv+sgla+ga++wvatl+rqce+ CA09g07360 455 NIYKPLVSSGLAFGAQRWVATLDRQCER 482 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 29 | 105 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-20 | 43 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-21 | 48 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-19 | 49 | 108 | No hit | No description |
Pfam | PF00046 | 4.7E-18 | 50 | 105 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.952 | 252 | 485 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.79E-32 | 253 | 484 | No hit | No description |
CDD | cd08875 | 4.38E-117 | 256 | 481 | No hit | No description |
SMART | SM00234 | 2.0E-56 | 261 | 482 | IPR002913 | START domain |
Pfam | PF01852 | 5.0E-50 | 262 | 482 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.0E-6 | 354 | 453 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.31E-22 | 502 | 738 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MIDVQVHSLD ISNNTSESDV PQDIGTKSGN SGGDADHAEQ DEDANNSRKR KRYHRHTQHQ 60 IQELEAYFKD CPHPDDKQRK ELSRVLGLDP LQIKFWFQNK RTQMKNQHER HENTHLRAEN 120 EKFKSEVMRY REALGNVSCP NCGVGQPQRV LINEMSFDER QLRLENARLR EEIVRITSEA 180 GRYVGRSLFQ NTTFQNNHNG YNSPTPADFG VLPPYSTPQS VVDGGEAFNN NNEVDIVDHQ 240 DISIMSSMIA PTEVEKQFII ELALVAMEEF VQMAHMKEPL WFSSNIDNGT SLLNEEEYFR 300 FFPRGIGPRP IGFNTEASRD TAIVIMNPIN LVEILMEANH WSSLFANIVS RASTIDVLST 360 AVGGNYNGAM QVIFAEFQVP SPQVPTRECY FVRYCKHRAD GTWAVMDVSL DQIRAGAALR 420 CRRRPSGCLI QELPNGCSKV TWVEHVEVDD TLVHNIYKPL VSSGLAFGAQ RWVATLDRQC 480 ERLASALATY SPTNSVTDMV LSTQESRRSM MKLAERMVNS FGSGVSASVG NHWTTLATGS 540 GTDENVRIMT RKSVDDPGRP PGVVLSAATS FWLPVPPKMV FDYLRDESRR TEWDILSNGG 600 TIQEMAHIAN GRETGNCVSL LKVHGQTESQ SNMLILQECS TDLTGSFVIY APIDINSMNV 660 VLNGGDPDFV ALLPSGFAIL PDGPPAGNCR GAYNDGSGGS LLTVAFQILV NSVPTARLSL 720 GSVATVNNLI SCTVDRIKGS LFPEA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580642.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2G2YTQ4 | 0.0 | A0A2G2YTQ4_CAPAN; Homeobox-leucine zipper protein MERISTEM L1 | ||||
STRING | XP_009611623.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |