PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g01310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRF | ||||||||
Protein Properties | Length: 240aa MW: 27376.3 Da PI: 9.1566 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.3 | 1.8e-25 | 168 | 212 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ CA09g01310 168 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVET 212 79****************************************997 PP | |||||||
2 | QLQ | 49.5 | 1.3e-17 | 102 | 138 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+yK+++a++PvP eLl i+k CA09g01310 102 SYFSLAQWQELELQALVYKHMLAGAPVPNELLHLIKK 138 79******************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-10 | 102 | 138 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.896 | 103 | 138 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-12 | 103 | 136 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.417 | 168 | 212 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-21 | 169 | 211 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDFNMKQWRN EQKNESSSEE VKNTAKLPRL VLDLDSSYFS SCYPHSSSAT TGFSVSCSDN 60 TDTSVLPLFV SEPPTNNKLS AFTLSPDSTV LTATKLPRME SSYFSLAQWQ ELELQALVYK 120 HMLAGAPVPN ELLHLIKKSL INSSPYYNLP QQYHHYQQAC YWGRTNMDPE PGRCRRTDGK 180 KWRCSRDVVS GHKYCERHVH RGRNRSRKPV ETTTTAAPRX XXXXXXXXXX XXXXXXXSP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 4e-63 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 4e-63 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015161507.1 | 1e-105 | PREDICTED: growth-regulating factor 3-like, partial | ||||
Swissprot | Q9SJR5 | 3e-58 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A2G3BIU0 | 1e-163 | A0A2G3BIU0_CAPCH; Growth-regulating factor 3 | ||||
STRING | Solyc09g009200.1.1 | 3e-92 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 3e-49 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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