PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g14280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 97aa MW: 10865.5 Da PI: 6.0663 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 73 | 4.7e-23 | 9 | 63 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC++N Aas ++++DGCgEf+++ g++gt++ + CaAC+CHR+FHR+ ++ CA08g14280 9 VVKYLECMHNYAASSMSYVFDGCGEFCSA-GAQGTPDFFICAACQCHRSFHRKMEV 63 589*************************9.999*******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.5E-21 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-13 | 10 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.9E-19 | 11 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.458 | 12 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MASNNKHLVV KYLECMHNYA ASSMSYVFDG CGEFCSAGAQ GTPDFFICAA CQCHRSFHRK 60 MEVEVESEAE LPINGTYLVE IRKIIYTFIY LISTSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582292.1 | 1e-52 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
Swissprot | Q9ZPW7 | 4e-16 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A1U8HFU6 | 2e-51 | A0A1U8HFU6_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Y201 | 2e-51 | A0A2G2Y201_CAPAN; zinc-finger homeodomain protein 3-like | ||||
STRING | Solyc01g103830.1.1 | 3e-27 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10889 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-18 | homeobox protein 24 |