PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g13700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25839.9 Da PI: 9.8404 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.2 | 6e-10 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 + +++ nr+ t kR++ + KK + L +LC++++++ii CA07g13700 10 FTQDHKNRKSTCVKRKASLVKKISKLAILCGIKACMII 47 567899*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.213 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-13 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-7 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-9 | 12 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRAKINMEF TQDHKNRKST CVKRKASLVK KISKLAILCG IKACMIIDGG ITDQDISQHD 60 QIWPNDPKQV HELINLYKAQ PLQGRSKRAK TLSNFFENQK KKVEVKAENY PTWDSRFDYL 120 SEKELRNLAC VLERRIENAK GKAGFLKRTN IGSSSLLSRQ EILDYTELMN YNNNLMNQTT 180 SWWPSIDYNF FQANIPSGVN SMGVEWIIDL LLPLIINLTM QIIL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555459.1 | 1e-167 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A1U8FGK9 | 1e-166 | A0A1U8FGK9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Z3S8 | 1e-166 | A0A2G2Z3S8_CAPAN; agamous-like MADS-box protein AGL82 | ||||
STRING | PGSC0003DMT400085676 | 7e-66 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-19 | M-type_MADS family protein |