PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g12530
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 432aa    MW: 48751.4 Da    PI: 5.4183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g12530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.91.2e-94394181373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                 l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL ++ +  +++  +   +s+ +     + +++++l  ++++ P+++f++ +
  CA07g12530  39 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISKASMVCPNATNFHGSSNLE----RRLMSVTELagYVDLIPWHRFGFCA 133
                 5799***********************************************9999666666555444443....34444444466************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....vakrledl 189
                  N+aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfef+v+    + + l++l
  CA07g12530 134 SNSAIYKAIEGQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVppfLNVSSEEVGQRLANFARLREVPFEFHVVedlnYDTFLSQL 232
                 ************************************************988755557889999***********************9776555578899 PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                 ++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk l+P +v++v++++d+ ns+++  r++ +++y +  fd+le+ lp++s++r  +
  CA07g12530 233 SPSTLQLRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKYLNPCIVTIVDEDCDLgNSSTLTSRIATCFNYLWIPFDTLETFLPKDSRQRLDY 331
                 *******************99999876643332447*************************************************************** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 E+  +g +i+n++  eg++r+er e+ +k ++r+e++GF +vp+se++ k++k+ll +++ ++g++ +ee++ lvl+Wk+++ v +++W
  CA07g12530 332 EAD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGFISVPFSEETIKEVKSLLDEHAsGWGMK-KEEHDMLVLTWKGHNSVYATSW 418
                 ***.********************************************************666555.45677899******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PROSITE profilePS5098545.25913399IPR005202Transcription factor GRAS
PfamPF035144.0E-9239418IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MRGTSTTIPL QNSSLFNNPQ SSLAGALQGC IGSLDGACLE KLLLHCASAL ENNDVTLAQQ  60
VMWVLNNLAS SNGDPNQRLT SWFLRALISK ASMVCPNATN FHGSSNLERR LMSVTELAGY  120
VDLIPWHRFG FCASNSAIYK AIEGQTKVHI LDFSITHCMQ WPTLIDAIAK RPEGPPSLRI  180
SVPSWRPQVP PFLNVSSEEV GQRLANFARL REVPFEFHVV EDLNYDTFLS QLSPSTLQLR  240
DDEALVVNCQ NWLRYLHDDE QIKGAISSRD IFLDRVKYLN PCIVTIVDED CDLGNSSTLT  300
SRIATCFNYL WIPFDTLETF LPKDSRQRLD YEADIGHKIE NIIGFEGNQR IERLESCNKF  360
SQRMENSGFI SVPFSEETIK EVKSLLDEHA SGWGMKKEEH DMLVLTWKGH NSVYATSWVI  420
IPPHMDMRIH E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-593341881472Protein SHORT-ROOT
5b3h_B2e-594041834418Protein SHORT-ROOT
5b3h_E2e-594041834418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580687.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016580688.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U8HB690.0A0A1U8HB69_CAPAN; scarecrow-like protein 32
TrEMBLA0A1U8HHQ20.0A0A1U8HHQ2_CAPAN; Uncharacterized protein
STRINGSolyc07g052960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-124GRAS family protein