PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g12450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23760.2 Da PI: 8.8708 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47 | 3.2e-15 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie+ + rq t+sk + KKA EL +LCd++v +++fs+t+++ yss CA07g12450 10 KIEDPTFRQQTYSKLKDRFVKKADELAILCDTDVGLLMFSPTDQVTSYSS 59 79*********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.212 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-20 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-16 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRNKRVMEK IEDPTFRQQT YSKLKDRFVK KADELAILCD TDVGLLMFSP TDQVTSYSSR 60 GSVEDIMLRV VNRYGNPYRQ PNPNEQVLSF THLLLIALCR KVLGVTSNLN MPFVAAFDAE 120 SHTVKICRTN GGQASYAHEA ELMKLNQRLR EAQEKMRYYE PQVEKISSVQ EADACQKFLM 180 SAMEQIQRSK ARILGGEGFV QGNENVAVK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579435.1 | 1e-104 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
Refseq | XP_016579436.1 | 1e-104 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
TrEMBL | A0A2G2Z2N2 | 1e-154 | A0A2G2Z2N2_CAPAN; Uncharacterized protein | ||||
STRING | XP_009776411.1 | 3e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 1e-23 | AGAMOUS-like 66 |