PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g27810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 51303.9 Da PI: 6.8573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.7e-13 | 317 | 363 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq CA06g27810 317 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 363 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.3E-44 | 35 | 213 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.66 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-14 | 316 | 367 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-18 | 316 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 317 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-17 | 317 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-15 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEGLLGSEAV EFFSWSASNH MLTEFTSSRG DLGVQQVLCK IVEGSDWTYA IYWQVAKSKS 60 GKSALIWGDG HCREAKMGQS EGGSDSAHQK MMDGNKKKMV LQKIHTCFGG SDDDNIAAKL 120 DSVSDVEVFY LTSMYYIFPF DKPSSPSQSF NSARSIWVSD YKGCSEHFQS RSYLAKLARF 180 ETLVFVPLKS GVVELGSVKS IPEDQNLIQM VKASVVVSNP PQPKAIPKIF GRELSLGGAK 240 SGPISINFSP KMEDDLSFAS DSYEVQAALG SSQVYGNSSN GYRSDEGEGK LYKEELDDRK 300 PRKRGRKPAN GREEALNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIT 360 DLQARIRVLD AEKEMVSDKQ KQQVIPEIDF HQRQDDAVVR VGCPLNAHPV STVLKTFQEH 420 QLVPLESNVS LTENNELVHT FSIRAPGSAA EDLKEKLTAA LAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_B | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_E | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_F | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_G | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_I | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_M | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
5gnj_N | 3e-27 | 311 | 379 | 2 | 70 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 306 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577434.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Refseq | XP_016577435.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Refseq | XP_016577437.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A2G2ZEL6 | 0.0 | A0A2G2ZEL6_CAPAN; Transcription factor bHLH3 | ||||
STRING | PGSC0003DMT400051672 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6669 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-146 | bHLH family protein |
Publications ? help Back to Top | |||
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