PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g23470

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 287aa MW: 31941.5 Da PI: 7.8803

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g23470	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H CA06g23470 90 YECKTCNRTFPSFQALGGHRTSH 112 99*********999998888777 PP
2	zf-C2H2	13.8	0.00017	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H CA06g23470 179 HECSICGAEFSSGQALGGHMRRH 201 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.8E-13	89	114	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.54E-7	89	112	No hit	No description
PROSITE profile	PS50157	10.408	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.059	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.54E-7	174	201	No hit	No description
PROSITE profile	PS50157	9.743	179	201	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.2E-13	179	203	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	179	201	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	181	201	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEFSEDSIDR TLVFKGKRSK RPRQFMAIST SSTSEEDEDM ANCLILLAQS GRCEKLQVET 60 TERKMVKISS RKFAEMATTS TGSKAGFYVY ECKTCNRTFP SFQALGGHRT SHKKIKTVTE 120 DKKSTADSNS QLQQGHHHQQ QLLHQHEEKS SRIITPSVNY STGNSNSVAN LINIKPKIHE 180 CSICGAEFSS GQALGGHMRR HRPPTITTTA TNTKNITVDE ISNTSDNSSH DENSKENKPK 240 IFLSLDLNLP ASPEDHDHQR DAANFEFSAN QQNLMFSAAA LVDCHY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576894.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A2G2ZDJ7	0.0	A0A2G2ZDJ7_CAPAN; Uncharacterized protein
STRING	Solyc06g074800.1.1	1e-138	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-43	C2H2 family protein