PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g13390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 356aa MW: 41352 Da PI: 8.0115

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g13390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.9	5.3e-16	22	107	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn YA F vrk ++k+ rn+eit+ f Cs eg++++ + ++ +r+r e r+gC a++k k + ++ w+v +++ H+H++ CA06g13390 22 AYNLYAVVKDFGVRKGPKTKN-RNNEITRCLFLCSYEGQSDKLSPF-QEMKRQRLEYRCGCLARIKFKIS-NDMWKVCEFNDVHSHPMI 107 59*************9999.5566**********999988.9999*************99.9************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-13	22	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-28	229	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDKNFVFEIG MKFDSEEESY NAYNLYAVVK DFGVRKGPKT KNRNNEITRC LFLCSYEGQS 60 DKLSPFQEMK RQRLEYRCGC LARIKFKISN DMWKVCEFND VHSHPMIEGN LRHFIQSGRK 120 LTSATKNILG SMVEAGIRTK KAIRYLQKEA GGIKNTEFIE QDAHNFIQAH KRNIISGGDA 180 QALINHFMHL QSEDSNFFYS FQVDEDGRFC NFFWRDSISR MHYECFGDVI IFDTTYRTNK 240 YNMICATFVG VNNHWKNIFF GCAFLCDETT SYFTWLFQAF LKGMGEKTPT TIFTDQAPTI 300 AAVVREVFPE TCHQLCEWYI DRNAQKIYPI FTGNKDFKTT SILSYGDASQ NQNLK*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDKNFVFEIG MKFDSEEESY NAYNLYAVVK DFGVRKGPKT KNRNNEITRC LFLCSYEGQS  60
DKLSPFQEMK RQRLEYRCGC LARIKFKISN DMWKVCEFND VHSHPMIEGN LRHFIQSGRK  120
LTSATKNILG SMVEAGIRTK KAIRYLQKEA GGIKNTEFIE QDAHNFIQAH KRNIISGGDA  180
QALINHFMHL QSEDSNFFYS FQVDEDGRFC NFFWRDSISR MHYECFGDVI IFDTTYRTNK  240
YNMICATFVG VNNHWKNIFF GCAFLCDETT SYFTWLFQAF LKGMGEKTPT TIFTDQAPTI  300
AAVVREVFPE TCHQLCEWYI DRNAQKIYPI FTGNKDFKTT SILSYGDASQ NQNLK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261901.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G2ZAF9	0.0	A0A2G2ZAF9_CAPAN; Uncharacterized protein
STRING	Solyc03g044690.1.1	1e-162	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-60	FAR1-related sequence 5