PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g10820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 639aa    MW: 73275.3 Da    PI: 7.3848
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g10820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK521.4e-16462508349
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                 ++++ +dl+ +F++++ dAA +L+v+ ++LKr CR+yGI+RWP  k 
  CA06g10820 462 DSVNYDDLKLHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPLSKR 508
                 678899*************************************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.719448533IPR003035RWP-RK domain
PfamPF020426.0E-16464510IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.602.1E-5474500IPR009057Homeodomain-like
SuperFamilySSF542771.37E-16540629No hitNo description
Gene3DG3DSA:3.10.20.2406.5E-15546629No hitNo description
PROSITE profilePS5174517.179548630IPR000270PB1 domain
SMARTSM006661.3E-9548630IPR000270PB1 domain
PfamPF005647.6E-13549628IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
VKQKIKAALQ RIETSQVILL QFWGLENIEG RNFLSTSGQP FGLRYLYKGL CWYRKHCQGY  60
KYSTVDHKGE NHEQGTTEKD NLFGPPTRVF QQKLPESSTH VGYYTNEEFP MRDHAVQCGV  120
RTYLALPVFE PIEKNCVGVI ELVTVWKGGY LTYEVERVLN PLEGVDLKCP KIYLNKGRKV  180
QAGKQNEREE IKTMLKIVRE THKLPFVRVW IPCVNLEMDH NGMYVGCTEH AISAGNEVYF  240
VADEEMDADN HVYDDYYYDD MLCFRDISKL QPLQKDQGVV GKAFSSDKLC YCKNITEFSI  300
IEYPLVHYAR WCGLTTSFAI CLKNRDDAYI MELFLPPDNA DPTILLGSIL STMGQHFRSF  360
KFASGQELGN DSRVQVVKAS SDKNVDYFHI YHLASPFMPE VLQAEEQRNQ LTEENKNLTG  420
KEGRQPPMAQ SDVLSIDPHI ISEKQCVGVT HLRKESRTRN KDSVNYDDLK LHFNKNLSDA  480
AESLQVSRST LKRLCRKYGI RRWPLSKRKK NTNSDNQALT ILPKKNKSTT SEITTSHTDH  540
ESSSGNSCFT IKATYGDDMM KFKLYTFSRK DDLDNEVAKR LQLPIGGFRI NYMDEDNDRI  600
WIACDDDLRD CFSNAQSLGK NTIKMLVLPA AINHHLEL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548231.10.0PREDICTED: protein NLP6-like isoform X1
TrEMBLA0A1U8EPB30.0A0A1U8EPB3_CAPAN; protein NLP6-like isoform X1
STRINGPGSC0003DMT4000319410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13879911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-81Nin-like family protein