PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g08710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 336aa    MW: 38634 Da    PI: 4.5495
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g08710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35331252103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws+ +nsf+v+d++++a ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++i+
    CA06g08710  33 FLTKTYELVDDPSSNDVVSWSRGNNSFIVWDPQSLAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFLRGKKHLLRTIR 120
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
    CA06g08710 121 RRRTT 125
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.16E-3528122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5829122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.7E-3729122IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3033122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDHFGNSIKE EFDGSFSTPR PLEGLHESGP PPFLTKTYEL VDDPSSNDVV SWSRGNNSFI  60
VWDPQSLAIN LLPRYFKHNN FSSFVRQLNT YGFRKVNPDH WEFANEGFLR GKKHLLRTIR  120
RRRTTNNFIK SSSSSSSQGM DSSLSSCVEL GSFGSFDEEI DRLRCDKQVL MIELVKLKQH  180
QKTTNSHLQA MEQKLAGTEM KQQQMMNFLA KALQNPNFVG QIMQQKDKRK ELEEAIKTKR  240
RRPIDQGPSN IKLEPQDFGD DDYINNEFDD DLEVAMNMQL EEDCYVEYMG NIELGGDNEG  300
LWEDMLNENV EDEIMALLGT DQQEDDQVHV DILSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-242812512123Heat shock factor protein 1
5d5u_B6e-242412417131Heat shock factor protein 1
5d5v_B6e-242412417131Heat shock factor protein 1
5d5v_D6e-242412417131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109122RGKKHLLRTIRRRR
2227241KRKELEEAIKTKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-112HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575394.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-110HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G2Z9F20.0A0A2G2Z9F2_CAPAN; Heat stress transcription factor A-2e
STRINGPGSC0003DMT4000419441e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B