PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g17960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 639aa    MW: 73304.8 Da    PI: 7.2534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g17960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.6e-11167207445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G+g+W+ + +++g +++ + c++++ 
       CA05g17960 167 WNADEEMLLLEGIEMYGMGNWAEVGEHVG-TKSKEACVDHFK 207
                      *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.3E-14094637IPR016827Transcriptional adaptor 2
SMARTSM002911.0E-10103148IPR000433Zinc finger, ZZ-type
PfamPF005692.5E-10105148IPR000433Zinc finger, ZZ-type
CDDcd023351.96E-23107155No hitNo description
SuperFamilySSF578502.71E-12107170No hitNo description
PROSITE profilePS5013511.195107150IPR000433Zinc finger, ZZ-type
PROSITE patternPS013570109136IPR000433Zinc finger, ZZ-type
SuperFamilySSF466895.3E-10161212IPR009057Homeodomain-like
PROSITE profilePS5129318.37162214IPR017884SANT domain
SMARTSM007171.4E-9163212IPR001005SANT/Myb domain
PfamPF002491.6E-10166207IPR001005SANT/Myb domain
CDDcd001674.15E-10167207No hitNo description
Gene3DG3DSA:1.10.10.608.8E-6167207IPR009057Homeodomain-like
PROSITE profilePS5093410.73552638IPR007526SWIRM domain
SuperFamilySSF466891.15E-16555635IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MQGEYCVYPA LAGVLMPDWH IKEEKECLKW RQFRICDSCS ILTTVDDCSF LVKSNWTRIL  60
VDNGLLELII FFSIHSIHYR FLNFVIRQRF CFHKLNQGTT DGKKALYHCN YCNKDLSGRT  120
RIKCAVCSDF DLCIECFSVG AEVHPHKSYH HYRVMDILAF PLICPDWNAD EEMLLLEGIE  180
MYGMGNWAEV GEHVGTKSKE ACVDHFKDEY LDSPYFPLPD MTHVMGKNRK ELLAMAKGNF  240
TDKKVSSLGE VVPKDESFSP SQVKYEYHIL YSVVEDSHRK GPSGRLSAVS NAVINSMNAS  300
GITGIKKPSS KSQIKIQNEP VKLEGRAGNL SFIRENILNL LLVDNSGRNF GGKKPKSLKE  360
DGSSLMKLSG YIPKREEFDP EYDNDAEQLL ADMEFKETET EQERELKLRV LRIYSKRLDE  420
RKRRKDFILE RNLLQPSEFE KNLSPEEKDL CRRYDAIMRF LSKEEHEELM KTVVSEHRYL  480
KRIQELKESR AAGCHSSIEV DRYLERKRKR ELEDGVPRKE SSQIGPMSQE SLNMPASSDS  540
LGTHSNRKPC SQANLSSIND SGVAALSAGE LLSEPEKQLC REIRLSPHHY LRMQEVLTIQ  600
IYSGNITRKS DAYPLFQIEA TKVDRVYDML LKKGVSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-391072225120Transcriptional adapter 2
6cw3_G2e-391072225120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420425RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0129500.0BT012950.1 Lycopersicon esculentum clone 114119F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554171.10.0PREDICTED: transcriptional adapter ADA2b isoform X1
SwissprotQ75LL61e-173TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2G2WV260.0A0A2G2WV26_CAPBA; Transcriptional adapter
STRINGPGSC0003DMT4000217850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]