PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g04400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 752aa MW: 83306.8 Da PI: 9.6741 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 120 | 165 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++GVr +k +g +vAe +dp + +r++lg+f t eeA +a+ a ++ CA05g04400 120 FSGVRKRK-QGEYVAEKWDPI----TkRRVWLGTFNTVEEATEAYLAKQRE 165 89***999.9******99962....35******************998776 PP | |||||||
2 | AP2 | 34.1 | 7e-11 | 291 | 330 | 4 | 47 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 GVr k +gr+ AeIrdp +r k+++lg+f+t eeA +a+ CA05g04400 291 LGVRKQK-NGRYGAEIRDP----IRhKNVWLGTFDTVEEASQACL 330 69**888.8*********7....357**************99975 PP | |||||||
3 | AP2 | 26.5 | 1.6e-08 | 575 | 620 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++ GV+ +k +g++ +eI p ++ k+++lg+f t eeA k + ++ CA05g04400 575 RIVGVHKNK-WGKYTSEIINP----ISkKKIWLGTFSTYEEASKTYQSKKL 620 789***999.*******9996....246***************98866665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.68E-14 | 118 | 159 | No hit | No description |
Pfam | PF00847 | 1.8E-7 | 119 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-7 | 119 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.131 | 119 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-14 | 119 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-11 | 120 | 171 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.301 | 289 | 352 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-9 | 290 | 331 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-5 | 291 | 358 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.80E-13 | 292 | 328 | No hit | No description |
Pfam | PF00847 | 1.0E-4 | 292 | 330 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-12 | 292 | 329 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-4 | 574 | 619 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.866 | 575 | 634 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-4 | 575 | 629 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-10 | 576 | 623 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-11 | 578 | 622 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MEPERAIAIE NVEENHCPVY AHHTFDKMPS SNSTYRSVAV GERSYSTVLG LQHLQHTANP 60 ITKKGVLFGT SGTAEVASEG SFDCAHHVLD EMTSSNSTNK TAAAEISDSA VLNLKYLTNF 120 SGVRKRKQGE YVAEKWDPIT KRRVWLGTFN TVEEATEAYL AKQREFANAH HMFDDMPSSN 180 SINKTAARSA AAESANAVER DRAVHGRTLF IKEVSFRDKT PSLGAELPSM GKLRKKDPFK 240 KKKVCKNFNS NIHESKKPIN VMNQGKEPVN CVESDRCNTV RRNRKAKTGL LGVRKQKNGR 300 YGAEIRDPIR HKNVWLGTFD TVEEASQACL SKKAEFDMLS QGKKKNKPTN YDQTLPESSA 360 GASLFVANGQ TLHAANVGRN KENKPKNCDQ IQPGSSVGAS LFVANYQTLH AANVGRNKEN 420 EPKNCDQIQS ESSVGVSLFV ANDQTLHVAN VDRNKEDEPK NCDQIQPELS VGALLFVAND 480 QTLHAANVGR NKENKPKNCD QIQPGSSVGA SLFVANDQTL LAANVGRNKV NKPKNCGLTQ 540 PGSSVRVSLS MANDQTLNAA NVSRNEKMDS PKTTRIVGVH KNKWGKYTSE IINPISKKKI 600 WLGTFSTYEE ASKTYQSKKL EFKKLVKPKK CDKKIHSTSK EKQVGKEKFG NVKSDHVNYE 660 RFQPESAVKF DILRSKEAEL QSKMPVDLST EEKQGGQEDA DMWTGQWVKL PNGKEVNFSL 720 KLGLPIIDSY GSLLGEFSSL DDLRIYDESI Y* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572339.1 | 0.0 | PREDICTED: uncharacterized protein LOC107870354 | ||||
TrEMBL | A0A2G2ZGI6 | 0.0 | A0A2G2ZGI6_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | Solyc04g009450.1.1 | 1e-106 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16587 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-13 | ERF family protein |