PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g17930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 18866.3 Da PI: 8.0454 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.3e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv G+vg++++++++++q+++++ CA04g17930 2 SCNGCRILRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMSFISAVPQNRRPALFKSLLFEACGRTVNPVTGVVGLLTTGNWHVCQKAVQT 100 6*************************99*******************************************************************9998 PP DUF260 95 all 97 +l+ CA04g17930 101 VLA 103 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.182 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSCNGCRILR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMS FISAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GVVGLLTTGN WHVCQKAVQT VLAGGNPLSY GGTWDIPSQF 120 SNESGSDHVD TTEWIGSRKR RRTTSSFGSE TELSELDSVK GEEEPKLLNL FV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 141 | RKRRR |
2 | 137 | 142 | RKRRRT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 3e-57 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571485.1 | 1e-122 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 4e-51 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2G2ZRE7 | 1e-123 | A0A2G2ZRE7_CAPAN; LOB domain-containing protein 37 | ||||
STRING | XP_009783238.1 | 7e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-53 | LOB domain-containing protein 38 |