PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g25050
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 474aa    MW: 52822.9 Da    PI: 8.7378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g25050genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.9e-1926116199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ffkv+   d + ++ l++p kfa++ ++   ++++  led+sgr+W v++  +k++g+  +++GW eF +++gLk+g+f+vF+++  + f   v++f +
  CA03g25050  26 FFKVM--IDKSFLKVLYFPPKFARSVSHL--TDQKTYLEDSSGRRWMVRV--CKHDGSLAIKQGWPEFSSEHGLKVGEFLVFHYVLGKHF--IVQIFGT 116
                 89999..77777778**********9765..4568***************..*******************************9966777..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2122119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3824117IPR003340B3 DNA binding domain
CDDcd100176.17E-2025114No hitNo description
Gene3DG3DSA:2.40.330.107.0E-2125119IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-1726115IPR003340B3 DNA binding domain
SMARTSM010192.1E-1526117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MERENKACDG CKNDCRLIHG KGVLSFFKVM IDKSFLKVLY FPPKFARSVS HLTDQKTYLE  60
DSSGRRWMVR VCKHDGSLAI KQGWPEFSSE HGLKVGEFLV FHYVLGKHFI VQIFGTSACE  120
KIKFCSDIGK GRKRARAYPE ATNPVELLQT TAIDSVKKKS KLSAALESEK ATYKPNIASF  180
AGNVDTDTEK GRLVHSAIHV DESFRVIDRN AQYDQTTTVG SVKKKSKLSA ALESEMVTNK  240
PNIANFAVNV NTDTEKGQSV HSAIHVDESF RVIDRNAQYD QTTAVGSVKQ KSKLSAALES  300
EKVMYKPNNA NFAVNADTDT EKGRSVHSPI HVDESFCVID RNAQYDQEDD RLCLHLSSFE  360
MPAIKPLAEG ISSPLKGDNG DDNHVETNSR SQTKPNLNFE NKKLKSEALL SQLEAGITAT  420
NMVSRPAEDF PPLAEDIPPR GPKYRNSKEA FQFRKFSVHN KLLGFFLFLL CLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136GRKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563770.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLA0A2G2ZVY50.0A0A2G2ZVY5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000392491e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-10B3 family protein