![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA03g24730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 112aa MW: 12525.2 Da PI: 6.9277 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.2e-16 | 27 | 90 | 32 | 99 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++ led+sg +W++++ +++ g+ +++GW+eF +++gL++gD++ F+++ ++ f +v +f + CA03g24730 27 TDQETYLEDSSGLRWKMTV--CNHNGSLAIRQGWSEFSSEHGLNVGDVLFFRYVPSDHF--LVEIFGT 90 45689**************..*******************************9976777..9999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.998 | 1 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-6 | 3 | 91 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.41E-18 | 12 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-13 | 16 | 88 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 26 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-11 | 28 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 112 aa Download sequence Send to blast |
MYFLILFFAI SFQFFPPSVA GSISHLTDQE TYLEDSSGLR WKMTVCNHNG SLAIRQGWSE 60 FSSEHGLNVG DVLFFRYVPS DHFLVEIFGT SGCEKITFGC DIGKGKKRAR T* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564642.1 | 2e-45 | PREDICTED: uncharacterized protein LOC107863290 isoform X3 | ||||
TrEMBL | A0A2G2V3S4 | 8e-46 | A0A2G2V3S4_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039249 | 2e-43 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-07 | B3 family protein |