PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g11670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 434aa    MW: 47846.6 Da    PI: 8.2256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g11670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-051941123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  CA03g11670 19 FVCEICNKGFQRDQNLQLHRRGH 41
                89*******************88 PP
2zf-C2H211.80.0007595117123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +t+
  CA03g11670  95 WKCDKCSKIYAVQSDWKAHSKTC 117
                 58*****************9998 PP
3zf-C2H211.20.0012125143523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsrk+++++H   +
  CA03g11670 125 DCGTIFSRKDSFVTHRAFC 143
                 8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-61841No hitNo description
Gene3DG3DSA:3.30.160.601.4E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9491941IPR007087Zinc finger, C2H2
SMARTSM003550.0171941IPR015880Zinc finger, C2H2-like
PfamPF121716.7E-51941IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-690115No hitNo description
SMARTSM0035518095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKESKKKAY  60
VCPEPTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  120
EYRCDCGTIF SRKDSFVTHR AFCDALAEES ARLSANSALM HRAVIASTIV NSSAIGEPNF  180
HLNQSSLFPY PTNQRHFANP PPPPMAAATT VTTHMSLNPW DPQIPLNPNP ITHEEHHNNH  240
NILHPVPIKT ESIHIPFTSS LPFYHEHYYP VIHKGGSFSI PSSPQLSATA LLQKAATMGT  300
HSTVSHVNSV MAQLGHHVTP KLSPEGFLSF ASENMSSNWQ KRENLTRDFL GLTGDHHHDQ  360
DHHDESSSAG GGGGGGFMAN GGNGLLSSFG GDGMHDYQDT LYDRDHSMLK HHQLGFGFGA  420
AAAESTTGTW GDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3591155367Zinc finger protein JACKDAW
5b3h_F4e-3591155367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-126HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-126HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565424.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ9ZWA61e-103IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1U8GBJ10.0A0A1U8GBJ1_CAPAN; protein indeterminate-domain 12-like
STRINGPGSC0003DMT4000497880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-104C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]