PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g05020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 370aa    MW: 42638.2 Da    PI: 5.3016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g05020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.79.9e-141696999
                HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +k+g l +p  f+ ++ +g+  e++t  +  ++g++W+v++  ++++   + +++W +Fv++ +L++g  +vF+++g++ef   +++f++
  CA03g05020 16 PGFKHG-LKIPIGFL-KYlKGQ--EHVTCAVLKRDGKKWRVQV--NGRK---LEEGNWGKFVEEFDLQVGNLLVFSHEGNMEF--EISIFDS 96
                556666.********.554777..7899***************..7776...77999*********************99999..8888876 PP
2B348.91.2e-151712451488
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 + l lp +fa ++g+ ++ + +l++ de+ rsW++k + + ++++  ++++GW++Fv +n +kegD + F+++ + 
  CA03g05020 171 SALFLPQQFALANGLTNK-KCKLIISDERQRSWKLKTCSSSNPRArAYIGNGWRKFVAENCIKEGDRIKFEVVTNG 245
                 5599*********88864.459999************88555555599***********************77643 PP
3B331.72.8e-103043681784
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  +pk+fa ++g+ ++ +  l+++d + rsW++kl  + +s + ++++   +F  +n LkegD++ +++
  CA03g05020 304 NVPKQFAIANGLTNK-KCGLIVRDGRQRSWNLKL--SSSSTQSYIGDEFHKFIAENCLKEGDILCLRY 368
                 58********77654.34799*************..999999*********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-17499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-16499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66797IPR003340B3 DNA binding domain
CDDcd100173.77E-13895No hitNo description
SMARTSM010192.7E-121097IPR003340B3 DNA binding domain
PfamPF023625.3E-111896IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-15157252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787158255IPR003340B3 DNA binding domain
SMARTSM010194.3E-10166255IPR003340B3 DNA binding domain
CDDcd100173.07E-11167240No hitNo description
Gene3DG3DSA:2.40.330.102.3E-14168252IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-13171247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-11290368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-10292368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.854305369IPR003340B3 DNA binding domain
CDDcd100175.35E-8305368No hitNo description
PfamPF023629.2E-8305368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKLPPKKPRF FKPILPGFKH GLKIPIGFLK YLKGQEHVTC AVLKRDGKKW RVQVNGRKLE  60
EGNWGKFVEE FDLQVGNLLV FSHEGNMEFE ISIFDSSQCS RAEYTQEDVV EDEVEVDEEE  120
EEEEEYEVEE EEDEYEDEDE EEEAKEVAID DNSCERFHFE CTIGKFCLFR SALFLPQQFA  180
LANGLTNKKC KLIISDERQR SWKLKTCSSS NPRARAYIGN GWRKFVAENC IKEGDRIKFE  240
VVTNGKTPIW KFQVVTDGET PMRNPNIDLS NKTSSPAEAA ATTKKAFVQS HFECTIRQYC  300
FLRNVPKQFA IANGLTNKKC GLIVRDGRQR SWNLKLSSSS TQSYIGDEFH KFIAENCLKE  360
GDILCLRYH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549257.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
RefseqXP_016549271.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X5
RefseqXP_016549278.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X7
TrEMBLA0A2G3ANT50.0A0A2G3ANT5_CAPAN; Uncharacterized protein
STRINGXP_009801953.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-28B3 family protein