PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g24540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27481.3 Da PI: 9.1691 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.2e-14 | 62 | 109 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ ++f L +l+P++ kKl+Ka++L A++YIk+L+ CA02g24540 62 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIKYIKQLE 109 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.961 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-12 | 62 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-18 | 63 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-17 | 64 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-13 | 64 | 113 | No hit | No description |
SMART | SM00353 | 6.9E-16 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKVKSEVPSG TTINFSSSSS METDDFGDSQ SLIQALGFPF GAADTNTTTQ KKSYSRTSLQ 60 AQDHVLAERK RRERLTQRFI ALSTLIPNLK KLDKATVLGD AIKYIKQLEE QLKTLEEKTK 120 KCKEVEQVVA VKRPRLASSC DDSSSSGEIS SVSTDRSLPD IEVRTSDGNI LIRIYCKKQT 180 GIMKEIFNEV DKLHLSVVSC SVMPFGYNTS HMTIIAQMDH KWSVTPNHIA NRIRAVIMKE 240 EASSGTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_B | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_E | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_F | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_G | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_I | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_M | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
5gnj_N | 6e-14 | 63 | 128 | 8 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | ERKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560886.1 | 1e-179 | PREDICTED: transcription factor bHLH25-like | ||||
TrEMBL | A0A2G3AB50 | 0.0 | A0A2G3AB50_CAPAN; Uncharacterized protein | ||||
STRING | Solyc02g091810.1.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-35 | bHLH family protein |