PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g02540

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 346aa MW: 38744.9 Da PI: 5.0648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g02540	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	163	206	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L CA02g02540 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 206 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.643	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-15	160	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-10	163	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	164	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.11E-5	164	211	No hit	No description
CDD	cd04873	0.00137	272	313	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MVLSDEDVLE ELLAPRRESW STFLSGSEVN DFSPNGWTFE SIPFYQNPEF IALNSSLLGL 60 ISPPTTTQSN NFHQCPDFTS PESYRVLDSS FTSPPDPLLE IQDEIAGIIP SDFHGLQEDL 120 NSFSTNNDVK VEEANSRIIG ICANVGQKKN KVRKVEGQPS KNLMAERRRR KRLNDRLSML 180 RSIVPKISKM DRTSILGDAI DYMKELLEKI HTLREDDNVK DEIKDIKFVG NFKELKPNEA 240 LVKKPPKVQH FTLANPCPIV NFFEVERRNV DTRIEICCAA KPGLLLSTVG TLEAIGLDLQ 300 QCVISCFSDF SLQASCSEAR EHRTILSSED VKQTLSNTAG YGGRC*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MVLSDEDVLE ELLAPRRESW STFLSGSEVN DFSPNGWTFE SIPFYQNPEF IALNSSLLGL  60
ISPPTTTQSN NFHQCPDFTS PESYRVLDSS FTSPPDPLLE IQDEIAGIIP SDFHGLQEDL  120
NSFSTNNDVK VEEANSRIIG ICANVGQKKN KVRKVEGQPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKM DRTSILGDAI DYMKELLEKI HTLREDDNVK DEIKDIKFVG NFKELKPNEA  240
LVKKPPKVQH FTLANPCPIV NFFEVERRNV DTRIEICCAA KPGLLLSTVG TLEAIGLDLQ  300
QCVISCFSDF SLQASCSEAR EHRTILSSED VKQTLSNTAG YGGRC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	172	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	2e-78	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016558830.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-74	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2G3A5A8	0.0	A0A2G3A5A8_CAPAN; Transcription factor bHLH93
STRING	XP_009797668.1	1e-176	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-76	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]